View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18699_low_3 (Length: 589)
Name: NF18699_low_3
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 21 - 579
Target Start/End: Complemental strand, 35212111 - 35211553
Alignment:
| Q |
21 |
atgtggaaggagaatgtgtccannnnnnngttgttggctgggatccaatgatcaccaaccgggtcaacccgtttaactgtagctggatccttttcgggtc |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35212111 |
atgtggaaggagaatgtgtccatttttttgttgttggctgggatccaatgatcaccaaccgggtcaacccgtttaactgtagccggatccttttcgggtc |
35212012 |
T |
|
| Q |
121 |
caaaattaaggggtgttgagacggatcttggaatgttgaagggcagttttaggctcaaattgttcaaggtttgaccccataagttgatgaaatctgaagc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35212011 |
caaaattaaggggtgttgagacggatcttggaatgttgaagggcagttttaggctcaaattgttcaaggtttgaccccataagttgatgaaatctgaagc |
35211912 |
T |
|
| Q |
221 |
tgaatgtgggtcccccattacatgggcccagctaaggcccaatgaaatcccaccacacttaaattgagttacctgcaaaaccaacgacttatgaatgctt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211911 |
tgaatgtgggtcccccattacatgggcccagctaaggcccaatgaaatcccaccacacttaaattgagttacctgcaaaaccaacgacttatgaatgctt |
35211812 |
T |
|
| Q |
321 |
ttcacgaatattcaatgcatggttcttgtttgatgcatgcaaaaccaagtttatatatacgttactatcattctatcaatgaaaaatatgattttgattg |
420 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211811 |
ttcacgaatattcaatgcatggctcttgtttgatgcatgcaaaaccaagtttatatatacgttactatcattctatcaatgaaaaatatgattttgattg |
35211712 |
T |
|
| Q |
421 |
aaaaagtatttttcttgtttatgtccctaaaagaatataagtactcaatttcaaaattccaataataatgtttttgtatgttgtgaagaacgttaatacg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
35211711 |
aaaaagtatttttcttgtttatgtccctaaaagaatataagtactcaatttcaaaattccaataataaagtttttgtatgttgtaaagaacgttaatacg |
35211612 |
T |
|
| Q |
521 |
tagtactctataactgaaagtaataatttcttgaaaagaagtcctcttaacaatctgtg |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211611 |
tagtactctataactgaaagtaataatttcttgaaaagaagtcctcttaacaatctgtg |
35211553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University