View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18699_low_4 (Length: 557)

Name: NF18699_low_4
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18699_low_4
NF18699_low_4
[»] chr3 (2 HSPs)
chr3 (16-182)||(30742457-30742623)
chr3 (284-328)||(30742720-30742764)
[»] chr4 (4 HSPs)
chr4 (18-182)||(30142086-30142250)
chr4 (19-164)||(19800295-19800440)
chr4 (284-327)||(19800154-19800197)
chr4 (284-327)||(30141946-30141989)
[»] chr5 (2 HSPs)
chr5 (18-164)||(22303082-22303228)
chr5 (284-327)||(22302940-22302983)
[»] chr2 (2 HSPs)
chr2 (284-387)||(22806344-22806447)
chr2 (137-182)||(22806202-22806247)
[»] chr6 (2 HSPs)
chr6 (432-529)||(20212523-20212620)
chr6 (432-529)||(22106546-22106643)
[»] chr8 (2 HSPs)
chr8 (284-327)||(24030701-24030744)
chr8 (132-170)||(24030853-24030891)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 30742457 - 30742623
Alignment:
Q  16 atgcgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcct 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30742457 atgcgattatttgactcctttgcgctcggaactgggttttggcctcaacatgaaagttgtagcatttgctcttagctttctaacacatggtcgcgggcct 30742556  T
Q  116 caaaccgataaacgctgctccagttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 182  Q
    ||||| |||||| ||  |||||||||| |||| |||||||||||||||| ||||| |||||||||||    
T  30742557 caaactgataaatgcaactccagttataccctacgcaatgaaaggtgtcaaattattgtttattcag 30742623  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 30742720 - 30742764
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatcaa 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30742720 catagcataagatagaagaaagtacattaaaaatgcactgatcaa 30742764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 30142250 - 30142086
Alignment:
Q  18 gcgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctca 117  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  30142250 gcgattatttgactcctttgtgctcggaactgggttctgtcctcaacatgaaagttgtagcattttctcttagctttccaacgcatggtcgcgggcctca 30142151  T
Q  118 aaccgataaacgctgctccagttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 182  Q
    ||||||||||| | |||||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  30142150 aaccgataaacacagctccagttatgccctgcacaatgaaagatgtcaaattactgtttattcag 30142086  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 19800440 - 19800295
Alignment:
Q  19 cgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaa 118  Q
    |||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||| ||| |||| |||||||||||||| | ||||||||||||||||||    
T  19800440 cgattacttgactcctttgcactccgaactgggttctgtcctcaacatgaaagttctagaattttctcttagctttccagcgcatggtcgcgggcctcaa 19800341  T
Q  119 accgataaacgctgctccagttatgccctgcgcaatgaaaggtgtc 164  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||    
T  19800340 accgataaacggagctccagttatgccctgcgtaatgaaaggtgtc 19800295  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 19800197 - 19800154
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatca 327  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  19800197 catagcataagatggaagaaagtacattaaaaatgcactgatca 19800154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 30141989 - 30141946
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatca 327  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  30141989 cataacataagatagaagaaagtacattaaaaatgcactgatca 30141946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 22303228 - 22303082
Alignment:
Q  18 gcgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctca 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||    
T  22303228 gcgattatttgactcctttgcgctcggaactgggttctgtcctcaacatgaaagttgtagcattttctcttagctttccaacgcatggttgtgggcctca 22303129  T
Q  118 aaccgataaacgctgctccagttatgccctgcgcaatgaaaggtgtc 164  Q
    || |||||||||| |||||||||||||||||||||||||||||||||    
T  22303128 aaacgataaacgcagctccagttatgccctgcgcaatgaaaggtgtc 22303082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 22302983 - 22302940
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22302983 catagcataagatagaagaaagtacattaaaaatgcactgatca 22302940  T

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Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 284 - 387
Target Start/End: Original strand, 22806344 - 22806447
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatcaaattcccccacacttaagcttttgctctccgagcaaatctcaagattaaagactca 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22806344 catagcataagatagaagaaagtacattaaaaatgcactgatcaaattcccccacacttaagcttttgctcttcgagcaaatctcaagattaaagactca 22806443  T
Q  384 aggt 387  Q
    ||||    
T  22806444 aggt 22806447  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 22806202 - 22806247
Alignment:
Q  137 agttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 182  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  22806202 agttatggcctgcgcaatgaaaggtgtccaattactgtttattcag 22806247  T

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Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 432 - 529
Target Start/End: Complemental strand, 20212620 - 20212523
Alignment:
Q  432 ttaaagaagcttatatgcagaaatcctccatggggcagaaaattcattaggctaggagagtttggagtcctgacatccctccaaccaagtctctcctt 529  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20212620 ttaaagaagcttatatccagaaatcctccatggggcagaaaattcattaggccaggagagtttggagtcctgacatccctccaaccaagtctctcctt 20212523  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 432 - 529
Target Start/End: Complemental strand, 22106643 - 22106546
Alignment:
Q  432 ttaaagaagcttatatgcagaaatcctccatggggcagaaaattcattaggctaggagagtttggagtcctgacatccctccaaccaagtctctcctt 529  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22106643 ttaaagaagcttatatccagaaatcctccatggggcagaaaattcattaggccaggagagtttggagtcctgacatccctccaaccaagtctctcctt 22106546  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 24030744 - 24030701
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24030744 catagcataagatagaagaaagtacattaaaaatgcactgatca 24030701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 24030891 - 24030853
Alignment:
Q  132 gctccagttatgccctgcgcaatgaaaggtgtccaatta 170  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  24030891 gctcgagttatgccctgcgcaatgaaaggtgtcaaatta 24030853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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