View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18699_low_7 (Length: 437)
Name: NF18699_low_7
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 183 - 415
Target Start/End: Original strand, 30911252 - 30911484
Alignment:
| Q |
183 |
gaacttatgattatgaatgttccatcaacttgataagtatgttagtcacactgacatataacgttcataaaatgtgttcactctacatgggatatagcca |
282 |
Q |
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| T |
30911252 |
gaacttatgattatgaatgttccacaaacttgataagtatgttagtcacactgacatataacgttcataaaatgtgttcactctacatgggatatagcca |
30911351 |
T |
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| Q |
283 |
tcaaacttggttcaaccttgtatggctacttagtttgaagtatggtgtggccaaatccatttagagtaaacacattttggaaggattgttaggatatact |
382 |
Q |
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| T |
30911352 |
tcaaacttggttcaaccttgtatggctacttagtttgaagtatggtgtggccaaatccatttagagtaaacacattttggaaggattgttaggatataca |
30911451 |
T |
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| Q |
383 |
ttcatataaatagtttaatgtcactattatatc |
415 |
Q |
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| T |
30911452 |
ttcatgtaaatagtttaatgtcactattatatc |
30911484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 30911054 - 30911216
Alignment:
| Q |
13 |
aaaatacaaaaaatgaaatcggtaaaaatcagcccagctttgaaatcatagtgaaccgatgcatataaaacttgttaattttgattcaagtgaaaaaatt |
112 |
Q |
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| T |
30911054 |
aaaatacaaaaaatgaaatcggtaaaaatcagcccagctttgaaatcatagtgaaccgatgcatataaaattagttaattttgattcaagtgaaaaaatt |
30911153 |
T |
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| Q |
113 |
gcaatttggttcaattttcagtaactgtttttgtggtttggttcaatttggtttagttttctc |
175 |
Q |
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| T |
30911154 |
gcaatttggttcaattttcagtaactgtttttgtggtttggttcaatttggtttagttttctc |
30911216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 381
Target Start/End: Original strand, 30918583 - 30918714
Alignment:
| Q |
248 |
cataaaatgtgttcactctacatgggatatagccatcaaacttggttcaaccttgtatggctacttagtttgaagtatggtgtggccaaatccatttaga |
347 |
Q |
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| T |
30918583 |
cataaaatatgttcacaatacacgggctttggccatcgaacttggttcaaccttatatggtcacttagtttaaagtttg--gtggctaaaatcgtgtacc |
30918680 |
T |
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| Q |
348 |
gtaaacacattttggaaggattgttaggatatac |
381 |
Q |
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| T |
30918681 |
gtaaacacatattggaaggattgttcggatatac |
30918714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 41916921 - 41916981
Alignment:
| Q |
102 |
gtgaaaaaattgcaatttggttcaattttcagtaactgtttttgtggtttggttcaatttg |
162 |
Q |
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| T |
41916921 |
gtgaaaaaattgcaatttggttcaattttcacaaacagtttttgtggttcggttcaatttg |
41916981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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