View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18699_low_8 (Length: 437)
Name: NF18699_low_8
Description: NF18699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18699_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 8350183 - 8350593
Alignment:
| Q |
19 |
ataactcacagcaacattactaacatcaaacataatcaaaccaccttcaccaaaaagaccacatttcccttcatgacaaagttcaatgaatgctcttaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8350183 |
ataactcacagcaacattactaacatcaaacataatcaaacctccttcaccaaaaagaccacatttcccttcatgacaaagttcaatgaatgcccttaga |
8350282 |
T |
|
| Q |
119 |
acaaccacaacaacagctgtgctacaaaaagttctccataaaagagcacttctccaccaacttgcaacctcttcaagagaaaagagaacgccgccaaccg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8350283 |
acaaccacaacaacagctgtgctacaaaaagttctccataaaagagcacttctccaccaacttgcaacctcttcaagagaaaagagaacgccgccaaccg |
8350382 |
T |
|
| Q |
219 |
gagctcggaaagccgcgcaaacccccgatgaagctccacatgtgattagatcgcgacggtcgcgatcgttgttgaagtatcttacccatttccatttgat |
318 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8350383 |
gagctcggaaagccgcgcaaacccccgacgaagctccacatgtgattagatcgcgacggtcgcgatcgttgttgaagtatcttacccatttccatttgat |
8350482 |
T |
|
| Q |
319 |
tctatgattgtctggacctccttggcctagtaaggaagcaatgcagcttcctatgtgtactaatggaccttcttttcctaagtctagacctgctgaaaca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8350483 |
tctatgattgtctggacctccttggcctagtaaggaagcaatgcagcttcctatgtgtactaatggaccttcttttcctaagtctagacctgctgaaaca |
8350582 |
T |
|
| Q |
419 |
gctcctatgct |
429 |
Q |
| |
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||||||||||| |
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| T |
8350583 |
gctcctatgct |
8350593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 429
Target Start/End: Complemental strand, 10398131 - 10397728
Alignment:
| Q |
26 |
acagcaacattactaacatcaaacataatcaaaccaccttcaccaaaaagaccacatttcccttcatgacaaagttcaatgaatgctcttagaacaacca |
125 |
Q |
| |
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|||| |||||| |||||||||||||| |||| || ||| |||| ||||| ||||||||||| | || | ||||||||| || || |||| |||| |
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| T |
10398131 |
acagtaacattgctaacatcaaacatgatcagcccgcctgcaccgaaaaggccacatttcccggagttgcagatttcaatgaaggccctaagaattacca |
10398032 |
T |
|
| Q |
126 |
caacaacagctgtgctacaaaaagttctccataaaagagcacttctccaccaacttgcaacctcttcaagagaaaagagaacgccgccaaccggagctcg |
225 |
Q |
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| || |||||||||| | |||| |||||||||| |||||||||||||||||| |||| ||||||||||| | ||| ||||| || ||||| || | | |
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| T |
10398031 |
ccaccacagctgtgcaaaaaaaggttctccatagaagagcacttctccaccaggttgctacctcttcaagggcaaaaagaactccaccaacaggggacct |
10397932 |
T |
|
| Q |
226 |
gaaagccgcgcaaacccccgatgaagctccacatgtgattagatcgcgacggtcgcgatcgttgttgaagtatcttacccatttccatttgattctatga |
325 |
Q |
| |
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||| || || ||||| || || || || ||||| || || ||||| |||||||| ||||| |||||||| |||| | ||| |||||||| | | | | |
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| T |
10397931 |
gaacgctgcacaaactcctgaagatgcaccacaggtaataagatcccgacggtcacgatcattgttgaaatatcgcagccagcgccatttgactttgtaa |
10397832 |
T |
|
| Q |
326 |
ttgtctggacctccttggcctagtaaggaagcaatgcagcttcctatgtgtactaatggaccttcttttcctaagtctagacctgctgaaacagctccta |
425 |
Q |
| |
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||||| || ||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||||||||| | ||||| ||||| || |||||||| | |
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| T |
10397831 |
ttgtcagggcctccttggcctagtaaggaagctatgcaacttcctatatgtaccaagggtccttcttttccaagatctaggcctgcagagacagctccaa |
10397732 |
T |
|
| Q |
426 |
tgct |
429 |
Q |
| |
|
|||| |
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|
| T |
10397731 |
tgct |
10397728 |
T |
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