View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_high_1 (Length: 704)
Name: NF18700_high_1
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 73 - 685
Target Start/End: Complemental strand, 18960075 - 18959466
Alignment:
| Q |
73 |
catatctcaacaggctgtagatattgtcttagaatatgtagttagacctaacatggcaatataggagggacaaattgaagatgaaacacggtttttcgaa |
172 |
Q |
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| T |
18960075 |
catatctcaacaggctgtagatattgtcttagaatatgtagttaggcctaacatggcaatataggaggggcaaatcaaaaatgaaacacggtttgtcgaa |
18959976 |
T |
|
| Q |
173 |
attttttctcatcggagggcagtgggtccatttggtaaacacgtgtaagattgtttctcaacacttggtaaacaatcttagtttatgtatttagacttaa |
272 |
Q |
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| T |
18959975 |
attttttctcatcggaggacagtgggtccacttggtaaacacgtgtaagattgtttctcaacacttggtaaacaatcttagtttatgtggttagacttaa |
18959876 |
T |
|
| Q |
273 |
gacaactcttaataccgacttgtgagacgatgattgccttcacttataaacacttaattattcagatcatctctcaatcaatgtgagaatcttcaacaaa |
372 |
Q |
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| T |
18959875 |
gacaactcttaataccgacttgtgagacgatgattgccttcacttataaacacttaattattcaaatcatctctcaatcaatgtgagactcttcaacaaa |
18959776 |
T |
|
| Q |
373 |
aattaagtttgatgatatatctcaaatacttttgcatataaaattgtattgaccttgtatgcactcttcttcatatgatagctctaaagacatttgttgt |
472 |
Q |
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| T |
18959775 |
aattaagtttgatgatatatcttaaatacttttgcatacaaaattgtattgaccttgtatgcact---cttcatatgatagctctaaagacatttgttgt |
18959679 |
T |
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| Q |
473 |
gttcggacggaagttcgaatttacaattttttactgtgcgagattctcgtcactagattatttgacaagaagaaaatgtgttgatagtattacacagtca |
572 |
Q |
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| T |
18959678 |
gttcggacggaagttcgaatttacaattttttactgtgcgagattctcgtcactagattatttgacaagaagaaaatgtgttgatagtattacacagtca |
18959579 |
T |
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| Q |
573 |
aatattttgcactaagcatacaagtgaattaagctcctaccaggcacatcaatggctgatgaatgatactttctgaaatgttctctgccattggttgtgt |
672 |
Q |
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| T |
18959578 |
aatattttgtactaagcatacaagtgaattaagctcctaccaggcacatcaatggctgctgaatgatactttctgaaatgttctctgccattggttgtgt |
18959479 |
T |
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| Q |
673 |
ggtatgccataga |
685 |
Q |
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| T |
18959478 |
ggtatgccataga |
18959466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 658
Target Start/End: Complemental strand, 18966394 - 18966335
Alignment:
| Q |
599 |
aattaagctcctaccaggcacatcaatggctgatgaatgatactttctgaaatgttctct |
658 |
Q |
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| T |
18966394 |
aattaagctcttaccaggcacatcaatagcagctgaatgatacttcctgaaatcttctct |
18966335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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