View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_high_11 (Length: 381)
Name: NF18700_high_11
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 26494024 - 26494356
Alignment:
| Q |
17 |
agtgcgtactagacgcacttataagcaaattaaaatttgaggcaaattttttgaataattcagttgagctcatcaactacattcaacacgccattttttg |
116 |
Q |
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| T |
26494024 |
agtgcgtactagacgcacttataagcaaattaaaatttgaggcaaattttttgaataattcagttgagctcatcaactacattcgacacgccattttttg |
26494123 |
T |
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| Q |
117 |
cttactattttccatgtgtttcggggaaaatgtggatagtaggaaaattgaaaaaataaaagacatccagcgacgtttgattttgagctctggacagttg |
216 |
Q |
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| T |
26494124 |
cttactattttccatgtgtttcggggaaaatgtggatagtaggaaaattgaaaaaataaaagacatccagagacgtttgattttgagctccggacagttg |
26494223 |
T |
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| Q |
217 |
ggtgctctaaatttcttcccgaaaattgtatctcgcgtgttgtttagaaaacgttggcaagaatttacgcaacttcggaagttgcaaaatgatttgttgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26494224 |
ggtgctctaaatttcttcccgaaaattgtatctcgcgtgttgtttagaaaacgttggcaagaatttacgcaacttcggaagttgcaaaatgatttgttgg |
26494323 |
T |
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| Q |
317 |
ttgaactaatacaagccagaaagaaagttattg |
349 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26494324 |
ttgaactaatacaagccagaaagaaagttattg |
26494356 |
T |
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