View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_high_13 (Length: 368)
Name: NF18700_high_13
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 24998701 - 24998519
Alignment:
| Q |
41 |
gtaaatcagacataaaagcttaacatcaattactctcatataacagtgaaattaaagagaaacttatcattaccttcattgttccccatgcccttcaacc |
140 |
Q |
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| T |
24998701 |
gtaaatcagacataaaaacttaacatcaattactctcatataacagtgaaattaaagagaaacttatcattaccttcattgttccccatgcccttcaacc |
24998602 |
T |
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| Q |
141 |
aaatcactaaaagtatataacccctgtatactaacagagaacattaaactgtaaaacctataacactaaccatatttgcattg |
223 |
Q |
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| T |
24998601 |
aaatcactaagagtatatagcccctggataccgacagagaacattaaactgtaaaacctataacactaaccatatttgcattg |
24998519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 24998480 - 24998398
Alignment:
| Q |
260 |
agacatgacaaaaatcgattaatcataatgaaaactggattgaataaatcaataaaatttcaacac--aaaataattcataag |
340 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24998480 |
agacatgacaaaatttgattaatcataatgaaaactggattgaataaatcaataaaatttcaacacaaaaaataattcataag |
24998398 |
T |
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