View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_high_17 (Length: 345)
Name: NF18700_high_17
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 2748931 - 2749255
Alignment:
| Q |
15 |
aatattaacttacttggctactcttctgttgtgtgttatatataatgttgcaactataacctgtgactttaatttgttacgcgtaggataataatgttac |
114 |
Q |
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| T |
2748931 |
aatattaacttacttggctactcttttgttatgtgttatatataatgttgcaactataacctgtgactttaatttgttacgcgtaggataataatgttac |
2749030 |
T |
|
| Q |
115 |
agatagcgtatcaatcatacaccaatattcttgtgtttctgttttcagaagaatagaaagtttaga-ttagaactataatcatcaatcatgcactaataa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2749031 |
agatagcgtatcaatcatacaccaatattcttgtgtttctgttttcagaagaatagaaagtttagatttagaactataatcatcaatcatgcactaataa |
2749130 |
T |
|
| Q |
214 |
tcctcaaagaaaatcaatcatgcacta-------annnnnnnnngacgaataatgcactaattataatatttcca-nnnnnnnattcattattaatttta |
305 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2749131 |
tcctcaaagaaaatcaatcatgcactattttttttattttttttgacgaataatgcactaattataatatttccattttttttattcattattaatttta |
2749230 |
T |
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| Q |
306 |
attacttttgatcatcaatgctttt |
330 |
Q |
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||||||||||||||||||||||||| |
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| T |
2749231 |
attacttttgatcatcaatgctttt |
2749255 |
T |
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