View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_high_19 (Length: 308)
Name: NF18700_high_19
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 5390629 - 5390833
Alignment:
| Q |
86 |
ttgttcttcccaccccaccaggcgaactttatttcaaacaatccagagctcagatcatcatggcacaatcttgtagactttagtcttgtcaatcgaacta |
185 |
Q |
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| T |
5390629 |
ttgttcttcccaccccaccaggggaactttatttcaaacaatccagagctcagatcatcatggcacaatcttgtacactttagttttgtcaatccaacta |
5390728 |
T |
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| Q |
186 |
atgaaagaattcttagaattcctaaatcccaagaatccatgttccttagccttgttcatactatccaacacaccctccactctcaacataaaatctgcaa |
285 |
Q |
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| T |
5390729 |
atgaacacattcttagaattcctaaatcccaagaatccatgttccttagacttgttcatactatccaacacaccctccactctaaacataaaatctgcaa |
5390828 |
T |
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| Q |
286 |
accac |
290 |
Q |
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||||| |
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| T |
5390829 |
accac |
5390833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 5399404 - 5399552
Alignment:
| Q |
142 |
atcatggcacaatcttgtagactttagtcttgtcaatcgaactaatgaaagaattcttagaattcctaaatcccaagaatccatgttccttagccttgtt |
241 |
Q |
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||||||||||||||||||| |||| ||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
5399404 |
atcatggcacaatcttgtaagcttttgtcttatcaatccaactaatgaacgaattcttagaattcctaaatcctaagaatccatgttccttagacttgtt |
5399503 |
T |
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| Q |
242 |
catactatccaacacaccctccactctcaacataaaatctgcaaaccac |
290 |
Q |
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| T |
5399504 |
catactatccaacacaccctccactctaaacataaaatctgcaaaccac |
5399552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 5394220 - 5394371
Alignment:
| Q |
139 |
atcatcatggcacaatcttgtagactttagtcttgtcaatcgaactaatgaaagaattcttagaattcctaaatcccaagaatccatgttccttagcctt |
238 |
Q |
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|||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| | |||||||||||||||||| || |
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| T |
5394220 |
atcatcatggcacaatcttgtaagcttttgtcttgtcaatccaactaatgaatgaattcttagaattcctaaatcctatgaatccatgttccttagcttt |
5394319 |
T |
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| Q |
239 |
gttcatactatccaacacaccctccactctcaacataaaatctgcaaaccac |
290 |
Q |
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| T |
5394320 |
gttcatagaatccaacacaccctccagtctcaaactaaaatctgcaaaccac |
5394371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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