View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18700_high_26 (Length: 243)

Name: NF18700_high_26
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18700_high_26
NF18700_high_26
[»] chr1 (2 HSPs)
chr1 (18-233)||(34593966-34594181)
chr1 (143-230)||(34578391-34578478)
[»] chr6 (3 HSPs)
chr6 (141-233)||(32601041-32601133)
chr6 (141-233)||(32590570-32590662)
chr6 (138-197)||(24883380-24883439)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 34593966 - 34594181
Alignment:
Q  18 atctgctatagaagtcatgctagggagaaagtaaaataattttgatcacaatatggaaaatgaagcaaagtaattgaacaatacatatcaatatagtgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593966 atctgctatagaagtcatgctagggagaaagtaaaataattttgatcacaatatggaaaatgaagcaaagtaattgaacaatacatatcaatatagtgag 34594065  T
Q  118 tttctgttttttccattgattccttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34594066 tttctgttttttccattgattccttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggt 34594165  T
Q  218 cttcccatcccctatg 233  Q
    ||||||||||||||||    
T  34594166 cttcccatcccctatg 34594181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 34578391 - 34578478
Alignment:
Q  143 acctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccct 230  Q
    |||| |||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||    
T  34578391 acctcttccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcccatcccct 34578478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 32601041 - 32601133
Alignment:
Q  141 ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg 233  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||    
T  32601041 ttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgtagcaggatcttcccatcccctatg 32601133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 32590570 - 32590662
Alignment:
Q  141 ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg 233  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  32590570 ttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg 32590662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 24883439 - 24883380
Alignment:
Q  138 tccttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacact 197  Q
    |||| |||||| ||| |||||||| |||||   |||||||||||||||||||||||||||    
T  24883439 tcctcacctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact 24883380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University