View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_high_29 (Length: 207)
Name: NF18700_high_29
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 53052991 - 53052812
Alignment:
| Q |
12 |
ccaagaatatgcatgttcatgacaacaaagaaaacttaatttatgaactcactaggagnnnnnnntatatattttattttcacaaaactactactcccac |
111 |
Q |
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| T |
53052991 |
ccaaggatgtgcatgttcatgacaacaaagaaaacttaatttatgaactcactaggagaaaaaaatatatattgtattttcacaaaagtactactcccac |
53052892 |
T |
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| Q |
112 |
ggccactcctccctctcatccctctactactttagagacgagaaatggcattttcacacttaaatttgatatcaaaattt |
191 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53052891 |
ggccactcctccctctcatccctctactagtttagagacgagaaatggcattttcatacttaaatttgatatcaaaattt |
53052812 |
T |
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