View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_high_4 (Length: 541)
Name: NF18700_high_4
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 42914983 - 42915524
Alignment:
| Q |
18 |
tttctctcttttcttttattgcaccacccaccatgtccacctactttgcctttattgcttttctttttccttttcaggggccaactagcttccactctaa |
117 |
Q |
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| T |
42914983 |
tttctctctttccttttattgcaccacccaccatgtccacctactttgcctttattgcttttctttttccttttcaggggccaactagcttccactctaa |
42915082 |
T |
|
| Q |
118 |
actgttgaaagtactcttttcctaatttacttgaggaaaccctaccccattccacattataaattaagatcacatgccatccactgcttgtggaaacaag |
217 |
Q |
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| T |
42915083 |
actgttgaaagtactcttttcctaatttactttgggaaaccctaccccattccacattataaattaagatcacatgccatccactgcttgtggaaacaag |
42915182 |
T |
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| Q |
218 |
taaccatcactacaacaaatggtaatggtagaatatgctaataatggattattcaaatggtaatgaatttcaattccttcatttaatttgacttttagaa |
317 |
Q |
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| T |
42915183 |
taaccatcactacaacaaatggtaatggtagaatatggtaataatggatgattcaaatggtaatgaatttcaattccttcatttaatttgacttttagaa |
42915282 |
T |
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| Q |
318 |
gagaagaatttatgttatgtaagttataaaaaattctttatcatcactaaaaaatgacgaaaacattgtatcattaatgttcaaatgaaataatttcaca |
417 |
Q |
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| T |
42915283 |
gagaagaatttatgttatgtaagttat---aaattctttatcatcactaaaaaatgtcgaaaacattgtatcattaatgttcaaatgaaataatttcaca |
42915379 |
T |
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| Q |
418 |
t----------------agatcctaatttgattcttgcttaacactctt-------------aatatctgttattttttcttgacaacaatactgtcaaa |
488 |
Q |
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| T |
42915380 |
tagaaaattatttgaaaagatcctaatttgattcttgcttaacactcttacaacagatagaaaatatctgttattttttcttgacaacaatactgtcaaa |
42915479 |
T |
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| Q |
489 |
aatcagtaatccgaaatgaaactagtcaattgtgtgttgatgatg |
533 |
Q |
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| T |
42915480 |
aatcagtaatcccaaatgaaactagtcaattgtgtgttaatgatg |
42915524 |
T |
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