View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18700_low_10 (Length: 386)

Name: NF18700_low_10
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18700_low_10
NF18700_low_10
[»] chr3 (2 HSPs)
chr3 (19-380)||(25793986-25794347)
chr3 (215-373)||(4314582-4314740)
[»] chr5 (5 HSPs)
chr5 (27-364)||(41349413-41349762)
chr5 (23-373)||(31201306-31201657)
chr5 (25-134)||(31161504-31161613)
chr5 (199-373)||(25834770-25834944)
chr5 (164-373)||(31161720-31161931)
[»] chr4 (2 HSPs)
chr4 (200-373)||(17183081-17183254)
chr4 (27-136)||(17182366-17182475)
[»] chr7 (3 HSPs)
chr7 (217-373)||(20602962-20603118)
chr7 (329-373)||(20621951-20621995)
chr7 (87-131)||(20603174-20603218)
[»] chr6 (1 HSPs)
chr6 (204-305)||(2328541-2328642)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 25793986 - 25794347
Alignment:
Q  19 ccacagccacagaagacatcttcaagtggatatcaaatgagccaaaaattctttatgcttctattgtactttgcaggctaatggatgacattgtgtccaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  25793986 ccacagccacagaagacatcttcaagtggatatcaaatgagccaaaaattcttaatgcttctgttgtactttgcaggctaatggatgacattgtgtccaa 25794085  T
Q  119 tgaggtatatatataattttttcatagaatattctcctcaatatatttgttttaattcaaatgatgtagacatttacatgaattattttttgttgcatag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25794086 tgaggtatatatataattttttcatagaatattctcctcaatatatttgttttaattcaaatgatgtagacatttacatgaattatttcttgttgcatag 25794185  T
Q  219 tttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaagagaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  25794186 tttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgatgtgtctagggaagctgccattcaagaaggccgaaagagaa 25794285  T
Q  319 ttcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcctatgaat 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25794286 ttcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcctatgaat 25794347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 215 - 373
Target Start/End: Complemental strand, 4314740 - 4314582
Alignment:
Q  215 atagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaag 314  Q
    |||||||||| |||||||||| |||||||| |||||| |||| || ||||||||  || || |  | ||||| |||| ||||||||||||||| |||||     
T  4314740 atagtttgaataaaaaagagatcatgtttcttcattcttggaatgctatatgaagcaacataatatctctagagaaggtgccattcaagaaggtcgaaaa 4314641  T
Q  315 agaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc 373  Q
    |||||| ||||||||||||||||||| ||| | |||||||||||||| |||||||||||    
T  4314640 agaattgttgatgcttggaaagatatgaataaggaatgtcttatgccgactgaagttcc 4314582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 364
Target Start/End: Complemental strand, 41349762 - 41349413
Alignment:
Q  27 acagaagacatcttcaagtggatatcaaatgagccaaaaattctttatgcttctattgtactttgcaggctaatggatgacattgtgtccaatgaggtat 126  Q
    ||||| ||||| ||||| ||| ||||||||||| |||||||| || ||||| ||||||| ||||||||| |||||||||| ||||| ||||| |||||||    
T  41349762 acagaggacatattcaaatgggtatcaaatgagtcaaaaattattaatgctgctattgtcctttgcaggataatggatgatattgtatccaacgaggtat 41349663  T
Q  127 atatata-------attt----tttcatagaatattctcctcaatatatttgttttaattcaaatgatgtagacatttacatgaattattttttgttgca 215  Q
    |||||||       || |    ||||| |  || ||||   ||||||||||||||| |||||||||||||  ||||||||||||| |||| ||| |||||    
T  41349662 atatatatatatatatataacatttcaaactatcttctttgcaatatatttgtttttattcaaatgatgtgaacatttacatgaagtattattt-ttgca 41349564  T
Q  216 ta--gtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaa 313  Q
    ||  |||||||||||||||||||||||||||||||||| |||| || |||||||   ||||| |  | ||||| |||||||||||||||||||| |||||    
T  41349563 tatagtttgaacaaaaaagagaacatgtttcctcattcttggaatgctatatgaggcaatataatatctctagagaagttgccattcaagaaggtcgaaa 41349464  T
Q  314 gagaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaac 364  Q
    ||||||| | ||||||||||||||||| ||| |||||||||||||| ||||    
T  41349463 gagaattgtagatgcttggaaagatattaataaagaatgtcttatgtcaac 41349413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 373
Target Start/End: Original strand, 31201306 - 31201657
Alignment:
Q  23 agccacagaagacatcttcaagtggatatcaaatgagccaaaaattctttatgcttctattgtactttgcaggctaatggatgacattgtgtccaatgag 122  Q
    ||||||||| ||||||||||||||| |||||||||| |||||| || || ||||| | ||| |  || | ||| ||||||||||||||||||||||||||    
T  31201306 agccacagaggacatcttcaagtgggtatcaaatgatccaaaagttattaatgctgcaattatcattggaaggttaatggatgacattgtgtccaatgag 31201405  T
Q  123 gtatatatataattttttcatagaatattctcctcaatatatttgttttaattcaaatgatgtagacatttacatgaattattttttgttgcata----g 218  Q
    ||| ||||||||  ||  || | ||| |||||  ||||||||||||||||||| | |  ||||| ||||||||   || |||| ||||||| |||    |    
T  31201406 gtacatatataaaattc-caaataattttctctacaatatatttgttttaattaaca--atgtaaacatttaccaaaactattatttgttggatatatag 31201502  T
Q  219 tttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaagagaa 318  Q
    ||||||||| |||||||||||||| |||||||| |||| || |||||||   ||||| | || |||||||||| ||||||||||||||| ||||| ||||    
T  31201503 tttgaacaagaaagagaacatgttacctcattcttggaatgctatatgaggcaatataatgtctctagggaagctgccattcaagaaggtcgaaatagaa 31201602  T
Q  319 ttcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc 373  Q
    ||  |||||||||||||||||| ||| | |||||| |||  ||||||||||||||    
T  31201603 ttgctgatgcttggaaagatatgaataaggaatgttttagaccaactgaagttcc 31201657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 31161504 - 31161613
Alignment:
Q  25 ccacagaagacatcttcaagtggatatcaaatgagccaaaaattctttatgcttctattgtactttgcaggctaatggatgacattgtgtccaatgaggt 124  Q
    ||||||| || ||| |||||||| ||||||||||  |||||||| || ||||| |||||||  || ||||| |||||||||||||||  |||||||||||    
T  31161504 ccacagaggagatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgacattgcatccaatgaggt 31161603  T
Q  125 atatatataa 134  Q
    ||| ||||||    
T  31161604 ataaatataa 31161613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 373
Target Start/End: Original strand, 25834770 - 25834944
Alignment:
Q  199 aattattttttgttgcatagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccat 298  Q
    |||||||| ||| || | |||| || || |||||||||||||||| ||||||  |||| || || |||||  | |||||  |||||||||||| ||| ||    
T  25834770 aattatttcttggtgtacagttcgagcataaaagagaacatgtttgctcattgttggattgctacatgaagcagtatgatatgtctagggaagctgctat 25834869  T
Q  299 tcaagaaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc 373  Q
    ||||||| |||  ||| |||||     ||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  25834870 tcaagaatgccataagggaattgcaattgcttggaaagatataaatgaggaatgtcttaggccaaccaaagttcc 25834944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 373
Target Start/End: Original strand, 31161720 - 31161931
Alignment:
Q  164 tttgttttaattcaaatgatgtagacatttacatgaattattttttgttgcata--gtttgaacaaaaaagagaacatgtttcctcattcctggagtgtt 261  Q
    |||||||||||||||  || ||| | |||||| ||||||||| || |||| |||  ||||||||| |||||||||||| | ||||||||| |||| || |    
T  31161720 tttgttttaattcaatggaagtaaaaatttacttgaattattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgct 31161819  T
Q  262 atatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgcc 361  Q
    | |||||  | ||| | || |||||||||| | |  |||||||||| | |||||| |||    |||||||||||||||| ||| |  ||||||||| |||    
T  31161820 acatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggcc 31161919  T
Q  362 aactgaagttcc 373  Q
    ||| ||| ||||    
T  31161920 aacagaaattcc 31161931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 373
Target Start/End: Original strand, 17183081 - 17183254
Alignment:
Q  200 attattttttgttgcatagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccatt 299  Q
    ||||||||||||| || |||||||||| ||||||| |||||||||||||||| |||| || |||||||| |||||  |  | ||||| |||| | | |||    
T  17183081 attattttttgttacacagtttgaacataaaagaggacatgtttcctcattcttggaatgctatatgaaggaatacaatatatctagagaagcttctatt 17183180  T
Q  300 caagaaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc 373  Q
    |||||| ||| ||| ||| || || ||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  17183181 caagaatgccaaaaaagagttgttaatgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttcc 17183254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 17182366 - 17182475
Alignment:
Q  27 acagaagacatcttcaagtggatatcaaatgagccaaaaattctttatgcttctattgtactttgcaggctaatggatgacattgtgtccaatgaggtat 126  Q
    ||||||||||||||||  ||| |  ||||| ||||||| |||||||||||| |   ||| ||||| |||||||||||||||||||||||||  |||||||    
T  17182366 acagaagacatcttcagttgggtgacaaataagccaaagattctttatgctgcatctgttctttgtaggctaatggatgacattgtgtccagcgaggtat 17182465  T
Q  127 atatataatt 136  Q
    | ||| ||||    
T  17182466 acataaaatt 17182475  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 373
Target Start/End: Complemental strand, 20603118 - 20602962
Alignment:
Q  217 agtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaagaaggccgaaagag 316  Q
    |||||||||| ||||||| |||||||| ||||||  | || |||||||||||  ||| |||  ||||||| |||| ||| ||||||||| ||  ||| ||    
T  20603118 agtttgaacagaaaagaggacatgtttgctcattgttagattgttatatgaagcaatttgatatgtctagagaagctgctattcaagaatgcaaaaatag 20603019  T
Q  317 aattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcc 373  Q
    |||      || ||||||||||||||||||||||||||||| ||||||  |||||||    
T  20603018 aatgacaattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttcc 20602962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 20621995 - 20621951
Alignment:
Q  329 ttggaaagatataaatgaagaatgtcttatgccaactgaagttcc 373  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||    
T  20621995 ttggaaagatataaatgaagaatgtcttaggccaaccaaagttcc 20621951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 20603218 - 20603174
Alignment:
Q  87 ctttgcaggctaatggatgacattgtgtccaatgaggtatatata 131  Q
    |||||||||||||||||||| ||||| |||| |||||||| ||||    
T  20603218 ctttgcaggctaatggatgaaattgtttccagtgaggtatttata 20603174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 305
Target Start/End: Original strand, 2328541 - 2328642
Alignment:
Q  204 ttttttgttgcatagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgacgtgtctagggaagttgccattcaag 303  Q
    |||||| || ||||||||||||  ||||||| |||||||| |||||| ||||| || ||||||||  ||||||   |||| ||||||| ||| |||||||    
T  2328541 ttttttattacatagtttgaacgtaaaagaggacatgtttgctcattgctggattgctatatgaagcaatatggtatgtcaagggaagctgctattcaag 2328640  T
Q  304 aa 305  Q
    ||    
T  2328641 aa 2328642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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