View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_low_11 (Length: 383)
Name: NF18700_low_11
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 1701911 - 1701552
Alignment:
| Q |
1 |
aaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagctacgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
1701911 |
aaatgatcaacaaacacaagataatatttgtaaccatgaactgaagtgataggagagggtccccaaacatcagaaaataacagttcaagaggagctgtgg |
1701812 |
T |
|
| Q |
101 |
ttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaannnnnnnattttctaagttcctaaaactgccaca |
200 |
Q |
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| T |
1701811 |
ttttgatagaagaaacagaaaaaggaagcttatgacttttattaatatggcaagaattacaatgaaattttttattttctaaattcctaaaattgccaca |
1701712 |
T |
|
| Q |
201 |
actagacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggt |
300 |
Q |
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| T |
1701711 |
agtagacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggt |
1701612 |
T |
|
| Q |
301 |
tgatattgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaac |
360 |
Q |
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| T |
1701611 |
tgatattgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaac |
1701552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 51 - 360
Target Start/End: Complemental strand, 181434 - 181125
Alignment:
| Q |
51 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
150 |
Q |
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| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
181335 |
T |
|
| Q |
151 |
caagaattacaatgaannnnnnnattttctaagttcctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
250 |
Q |
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| T |
181334 |
caagaattacaatgaaattttttattttctaagttcctaaaattgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
181235 |
T |
|
| Q |
251 |
catgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaacc |
350 |
Q |
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| T |
181234 |
catgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgatattgagacatataatgaaaggtgtagagatcactgttactggaacc |
181135 |
T |
|
| Q |
351 |
gcgcatcaac |
360 |
Q |
| |
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|||||||||| |
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| T |
181134 |
gcgcatcaac |
181125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 5400647 - 5400484
Alignment:
| Q |
1 |
aaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagctacgg |
100 |
Q |
| |
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||||| |||||||| ||||||||||| |||||||||||| || || ||||| || ||||||||||||||||| || | ||||||| |||| | | |
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| T |
5400647 |
aaatggtcaacaaagacaagataatacctgtaaccattaatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggagagaaag |
5400548 |
T |
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| Q |
101 |
ttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
164 |
Q |
| |
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||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
5400547 |
tttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
5400484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3541622 - 3541459
Alignment:
| Q |
1 |
aaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagctacgg |
100 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||||| | || || ||||| || ||||||||||||||||| || | ||||||| |||| | | |
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| T |
3541622 |
aaatggtcaacaaagacaagataatacttgtaaccattgatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggagagaaag |
3541523 |
T |
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| Q |
101 |
ttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
164 |
Q |
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||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
3541522 |
tttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
3541459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 26592533 - 26592600
Alignment:
| Q |
7 |
tcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
74 |
Q |
| |
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||||||||||||||||| ||| | |||||||||| || || ||||| || ||||||||||||||||| |
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| T |
26592533 |
tcaacaaacacaagatagtatctataaccattaatggatgttataggggatggtccccaaacatcaga |
26592600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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