View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18700_low_13 (Length: 376)
Name: NF18700_low_13
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 15804926 - 15804566
Alignment:
| Q |
1 |
tatgatgacactaatgtatttttactttttctaacaaaatgtatcaactcaagtgtctaataatccatatttatatgcagacttggaaactctggtgtga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15804926 |
tatgatgacactaatgtatttgtactttttctaacaaaatgtatcaactcaagtgtctaataatccatatttatatgcagacttggaaactctggtgtga |
15804827 |
T |
|
| Q |
101 |
aggaaaaagtttagaattaatcgacccattccaccaaaagacatacattgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
15804826 |
aggaaaaagtttagaattaatcgatccattccaccaaaaaatgtacattgaaagtgaagtcttgaagtgtatacacattggtttactttgtgtacaagaa |
15804727 |
T |
|
| Q |
201 |
gatgccgcagatcgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtagaccttccaaaacccacgcaaccagcattttcagttggta |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15804726 |
gatgcagcagatcgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtagaccttccaaaacccacgcaaccagcattttcagttggta |
15804627 |
T |
|
| Q |
301 |
gaaaacccaagaatgaagatcaaagttcaaaaaattataaggataattctgttgatgaaga |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15804626 |
gaaaacccaagaatgaagatcaaagttcaaaaaattataaggataattctgttgatgaaga |
15804566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 15799303 - 15798952
Alignment:
| Q |
9 |
cactaatgtatttttactttttctaacaaaatgtatcaactcaagtgtctaataatccatatttatatgcagacttggaaactctggtgtgaaggaaaaa |
108 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
15799303 |
cactaatatatttttaaattttctaacaaaatat-tcaactcaagtgtctaaatatccatatttgtatgcagacttggaaactctggtgtgaagggaaat |
15799205 |
T |
|
| Q |
109 |
gtttagaattaatcgacccattccaccaaaagacatacattgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaagatgccgc |
208 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
15799204 |
gtttggaattaatcgatccattccaccaaaaaacatacattgaaagtgaagtcttgaagtgtatacacattggtttactttgtgtacaagaagatgcagc |
15799105 |
T |
|
| Q |
209 |
agatcgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtagaccttccaaaacccacgcaaccagcattttcagttggtagaaaaccc |
308 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
15799104 |
agatcgaccaacgatgtccaccgttgttcgcatgctagggagtgacacagtagaccttccgaaacccacgcaaccagcattttcagttggcagaaagtcc |
15799005 |
T |
|
| Q |
309 |
aagaatgaagatcaaagttcaaaaaattataaggataattctgttgatgaaga |
361 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15799004 |
aagaatgaagatcaaatttcaaaaaattctaaggataattctgttgatgaaga |
15798952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 15812705 - 15812352
Alignment:
| Q |
8 |
acactaatgtatttttactttttctaacaaaatgtatcaactcaagtgtctaataatccatatttatatgcagacttggaaactctggtgtgaaggaaaa |
107 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||| ||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
15812705 |
acactaatgtatttttacattatctgacaaaatgtttcaactcaagtttctaaatatccatattcgtttgcagacttggaaactctggtgtgaaggaaaa |
15812606 |
T |
|
| Q |
108 |
agtttagaattaatcgacccattccaccaaaagacatacattgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaagatgccg |
207 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| || || |||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||| || | |
|
|
| T |
15812605 |
agtttagaattaatcgatccattccacaaaaaaacgtatgttgagagtgaagtcatgaagtgtattcacattggtttattgtgcgtacaagaagacgcag |
15812506 |
T |
|
| Q |
208 |
cagatcgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtagaccttccaaaacccacgcaaccagcattttcagttggtagaaaacc |
307 |
Q |
| |
|
||||| | ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||| ||||| | |
|
|
| T |
15812505 |
cagataggccaacgatgtccatcgttgttcgcatgctagggagtgacacagtagaccttccaaaacccacacaaccagcatattccattggcagaaagtc |
15812406 |
T |
|
| Q |
308 |
caagaatgaagatcaaagttcaaaaaattataaggataattctgttgatgaaga |
361 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15812405 |
gaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaaga |
15812352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 15763894 - 15763547
Alignment:
| Q |
1 |
tatgatgacactaatgtatttttactttttctaacaaaatgtatcaactcaagtgtctaataatccatatttatatgcagacttggaaactctggtgtga |
100 |
Q |
| |
|
||||||| ||||||| || ||| || |||| ||||| ||||| ||||||||||||||||| |||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
15763894 |
tatgatggcactaatttactttaacattttttaacataatgtttcaactcaagtgtctaaatatccatatttgtgtgcagacttggaaactttggtgtga |
15763795 |
T |
|
| Q |
101 |
aggaaaaagtttagaattaatcgacccattccaccaaaagacatacattgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15763794 |
aggaaaaagtatagaattaatcgatccatttcaccaaaagacgtacattgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaa |
15763695 |
T |
|
| Q |
201 |
gatgccgcagatcgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtagaccttccaaaacccacgcaaccagcattttcagttggta |
300 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || ||| | |||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||| | |
|
|
| T |
15763694 |
gatgcagcagatcgaccaaccatttccactgtcgttcgtatgctagggagtgatacagtagctcttccacaacccaatcaaccagcattttcagttggga |
15763595 |
T |
|
| Q |
301 |
gaaaacccaagaatgaagatcaaagttcaaaaaattataaggataatt |
348 |
Q |
| |
|
||| |||||||||| ||||||| |||||||| || |||||||||| |
|
|
| T |
15763594 |
gaatgtccaagaatgatgatcaaacttcaaaaacttccaaggataatt |
15763547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 15722036 - 15721754
Alignment:
| Q |
13 |
aatgtatttttactttttctaacaaaatgtatcaactcaagtgtctaataatccatatttatatgcagacttggaaactctggtgtgaaggaaaaagttt |
112 |
Q |
| |
|
|||| ||||||| |||||| ||||||||| ||| |||||||||||| || |||| || ||||||||| |||| ||| ||||||||||||||| | || |
|
|
| T |
15722036 |
aatggatttttagattttctgacaaaatgttccaattcaagtgtctaaatattcataattgtatgcagacatggagactttggtgtgaaggaaaatgctt |
15721937 |
T |
|
| Q |
113 |
agaattaatcgacccattccaccaaaagacatacattgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaagatgccgcagat |
212 |
Q |
| |
|
||| |||| | ||| ||||| || | ||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
15721936 |
ggaaaaaatccatccaatccacaaagaatcatacattgaaagtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagat |
15721837 |
T |
|
| Q |
213 |
cgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtagaccttccaaaacccacgcaaccagcattttcagt |
295 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| ||||| ||| || ||||||||| |||| || ||||||||||||||| |
|
|
| T |
15721836 |
cgaccaacaatgtccaccgttgttgtcatgctaggtagtgacacaataacccttccaaatcccaagccaccagcattttcagt |
15721754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 66 - 295
Target Start/End: Complemental strand, 15696690 - 15696461
Alignment:
| Q |
66 |
catatttatatgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgacccattccaccaaaagacatacattgaaagtgaagtcttga |
165 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||||||||||| || |||||||| || ||| ||||| |||| |||||||||||||||| || ||| |
|
|
| T |
15696690 |
catatttgtatgcagacttggaagctttggtgtgaaggaaaaagcttggaattaatagatccaatccacaaaaaatcatacattgaaagtgaggttatga |
15696591 |
T |
|
| Q |
166 |
agtgtatacacattggtttattgtgtgtacaagaagatgccgcagatcgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtagacct |
265 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||| |||||||| ||||| ||| | | | |
|
|
| T |
15696590 |
agtgcatacacattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacacaatgcccat |
15696491 |
T |
|
| Q |
266 |
tccaaaacccacgcaaccagcattttcagt |
295 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |
|
|
| T |
15696490 |
tccaaaacccaagcaaccggcattttcagt |
15696461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 44 - 303
Target Start/End: Complemental strand, 15703312 - 15703053
Alignment:
| Q |
44 |
tcaactcaagtgtctaataatccatatttatatgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgacccattccaccaaaagaca |
143 |
Q |
| |
|
|||||||||||| ||||| || |||| |||||||||||||||||||| ||||| ||| |||||||||| ||| |||| || ||| ||||| || | || |
|
|
| T |
15703312 |
tcaactcaagtgactaattattcataactatatgcagacttggaaactttggtgcgaaagaaaaagtttggaaataatagatccaatccacaaagaatca |
15703213 |
T |
|
| Q |
144 |
tacattgaaagtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaagatgccgcagatcgaccaaccatgtccaccgttgttagcatgc |
243 |
Q |
| |
|
|||||||||||||| || || || ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
15703212 |
tacattgaaagtgaggttctgcgatgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgc |
15703113 |
T |
|
| Q |
244 |
tagggagtgagacagtagaccttccaaaacccacgcaaccagcattttcagttggtagaa |
303 |
Q |
| |
|
|||| ||||| ||| | ||||| ||||||| | || |||||||||||||||| |||| |
|
|
| T |
15703112 |
taggaagtgacacaatgcctcttccgaaacccatgaaagcagcattttcagttggaagaa |
15703053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 274
Target Start/End: Complemental strand, 15710900 - 15710695
Alignment:
| Q |
69 |
atttatatgcagacttggaaactctggtgtgaaggaaaaagtttagaattaatcgacccattccaccaaaagacatacattgaaagtgaagtcttgaagt |
168 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||| ||||||| ||||| | || ||| |||| ||| ||||||| ||||||||||| |||||| |
|
|
| T |
15710900 |
atttgtatgcagacttggaaactatggggtgaaggtaaaagttgggaattcgttgatccaatccaaagaaaatcatacatcgaaagtgaagttatgaagt |
15710801 |
T |
|
| Q |
169 |
gtatacacattggtttattgtgtgtacaagaagatgccgcagatcgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtagaccttcc |
268 |
Q |
| |
|
| ||||||| |||||||||||||| || ||||| || |||||||||||||||||||||||| ||||| ||||||||| || || ||| | | |||||| |
|
|
| T |
15710800 |
gcgtacacatcggtttattgtgtgtgcaggaagacgctgcagatcgaccaaccatgtccaccattgttctcatgctaggcagcgacacaatggtccttcc |
15710701 |
T |
|
| Q |
269 |
aaaacc |
274 |
Q |
| |
|
|||||| |
|
|
| T |
15710700 |
aaaacc |
15710695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 15692175 - 15692125
Alignment:
| Q |
186 |
ttgtgtgtacaagaagatgccgcagatcgaccaaccatgtccaccgttgtt |
236 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||| || |||||| |
|
|
| T |
15692175 |
ttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgtt |
15692125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 305
Target Start/End: Complemental strand, 4547267 - 4547125
Alignment:
| Q |
163 |
tgaagtgtatacacattggtttattgtgtgtacaagaagatgccgcagatcgaccaaccatgtccaccgttgttagcatgctagggagtgagacagtaga |
262 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| | ||| ||||||||||||||| |||||| |||||| | ||||| ||| ||| |
|
|
| T |
4547267 |
tgaagtgtatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatagc |
4547168 |
T |
|
| Q |
263 |
ccttccaaaacccacgcaaccagcattttcagttggtagaaaa |
305 |
Q |
| |
|
||||| || || | || || |||||||||||||| |||||| |
|
|
| T |
4547167 |
acttcccaatcctaaacatcctgcattttcagttggaagaaaa |
4547125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 3095672 - 3095729
Alignment:
| Q |
171 |
atacacattggtttattgtgtgtacaagaagatgccgcagatcgaccaaccatgtcca |
228 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
3095672 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtcca |
3095729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 3132535 - 3132489
Alignment:
| Q |
153 |
agtgaagtcttgaagtgtatacacattggtttattgtgtgtacaaga |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3132535 |
agtgaagttttgaagtgtatacacattggcctattgtgtgtacaaga |
3132489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 3081235 - 3081292
Alignment:
| Q |
171 |
atacacattggtttattgtgtgtacaagaagatgccgcagatcgaccaaccatgtcca |
228 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
3081235 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtcca |
3081292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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