View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18700_low_14 (Length: 369)
Name: NF18700_low_14
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_14 |
 | |
|
| [»] scaffold0294 (2 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 25568491 - 25568148
Alignment:
| Q |
8 |
catcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnn-tatcaaac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25568491 |
catcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttacccccccctatcaaac |
25568392 |
T |
|
| Q |
107 |
aaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25568391 |
aaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctttagggcttgcttgct |
25568292 |
T |
|
| Q |
207 |
tgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25568291 |
tgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatc |
25568192 |
T |
|
| Q |
307 |
tctagtggtgatgactattctactacccgaaccaaagcattgac |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25568191 |
tctagtggtgatgactattctactacccgaaccaaaccattgac |
25568148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 4322600 - 4322931
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||| ||||||||| | || ||||||||||||||||| ||||||||| ||| ||||||| || |
|
|
| T |
4322600 |
tttaagccatcgtagcttatttttaacttctgatgtacttgatcattgggaattcttttgagtttctccaatacacaaatccactctgttacctccc-ta |
4322698 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||||| |||||||||| || ||||||| |||||||||| | |||||| | ||||| || | |
|
|
| T |
4322699 |
tcaaacaaataggacccaaggacttcaagagctagcggcaatctcccagaatactgaactacatttgtggaaatttctgaaaaatctttgctaggcctcg |
4322798 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||| |||| ||||||||| || | |
|
|
| T |
4322799 |
cttgcttgaatgcatgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttgtcaaccctatttcctctaagtatatg |
4322898 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctactacc |
333 |
Q |
| |
|
| |||||||||| ||||||| |||||||||||| |
|
|
| T |
4322899 |
cttatctctagttgtgatgattattctactacc |
4322931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 4125935 - 4126263
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| | || ||||||||||||||||| ||||||||| ||| |||| || || |
|
|
| T |
4125935 |
tttaaaccatcatagcttatttttaacttcttatgtacttgatcattgggaattcttttgagtttctccaatacacaaatccactctgatacctccc-ta |
4126033 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
||||||||||| || ||||| ||||| |||||||| |||||||| |||||||| | || ||||||||| |||||||||| | ||||||||||||| || | |
|
|
| T |
4126034 |
tcaaacaaataggatccaaggacttcaagagctagtggcaatcccccagaatatttaactacatttctagaaatttcagaataatcatctctaggactcg |
4126133 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
||||||||| |||||||| |||||||| |||| |||||||||||| ||||||||||||| ||||||||| |||||||||| |||| ||| || | |
|
|
| T |
4126134 |
tttgcttgaaagcatgccaactaaaaagttcaagagattcactttcatccatttctttcattatgtatattttgtcaactctatcccctcgaagtatatg |
4126233 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctact |
330 |
Q |
| |
|
| |||| || || ||||||| ||||||||| |
|
|
| T |
4126234 |
cttatccctggtcgtgatgattattctact |
4126263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4358914 - 4358636
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacat-tctcccattctgttannnnnnnt |
99 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| || |||||| | || ||||||||||| ||||| ||||||||| ||||| | ||| | | |
|
|
| T |
4358914 |
tttaaaccatcataacttatttttaacttcttatgcacttgatcattgggaattctttttagtttatccaatacagatctcc-actctaa-aatctccct |
4358817 |
T |
|
| Q |
100 |
atcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggctt |
199 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||| || ||||||| |||||||||||| |||||| |||||||| ||| |
|
|
| T |
4358816 |
atcaaacaaataagacccaaggacttcaagagctagtggcaatcccgcagaatacttaactacatttttggaaatttcagaaaaatcttctctaggcctt |
4358717 |
T |
|
| Q |
200 |
gcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaact |
280 |
Q |
| |
|
| ||||||||| || ||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
4358716 |
gtttgcttgaacgcgtgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttatcaact |
4358636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 4334056 - 4333774
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| | || |||||| |||||||||| ||||||||| ||| ||| || || |
|
|
| T |
4334056 |
tttaaaccatcatagcttatttttaacttcttatgtacttgatcattgggaattattttgagtttctccaatacacaaatccactctaatatctccc-ta |
4333958 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||||||||| ||||| |||||||||| || ||||||||||||||||||| |||||| ||| | || || | |
|
|
| T |
4333957 |
tcaaacaaataggacccgaggacttcaagagctagcggtaatcccccagaatacttaacaacatttctggaaatttcagaaaaatcttctgtgggactcg |
4333858 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctat |
284 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||||||||| |||||||||||||| |||| ||| |||||||||| |
|
|
| T |
4333857 |
tttgcttgaatgcatgcaaactaaaaagctcaagagattcactttcatccatttctttcattgagtatgttttgtcaactctat |
4333774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 101 - 272
Target Start/End: Complemental strand, 4343346 - 4343176
Alignment:
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||| |||||||| || |||||| || | ||||| |||||||||||| |||||| ||||||||||| | |
|
|
| T |
4343346 |
tcaaacaaataggacccaaggacttcaagagctagaggcaatcccgcacaatacttaact-catttttggaaatttcagaaaaatcttctctagggctcg |
4343248 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatattt |
272 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
4343247 |
ttagcttgaatgcatgccaactaaaaagctcaagagattcacttccatccatttctttcattatgtatattt |
4343176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 4135280 - 4135624
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttagg-aattcttttgagtttttccaatacattctcccattctgttannnnnnnt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| | || || |||||| ||||||| | |||||| | |||||||| ||||| | |
|
|
| T |
4135280 |
tttaaaccatcatagcttattttcaacttcttttgcacttgatcattggggaattctcttgagttct-ccaatagacactcccattttgttacctgtc-t |
4135377 |
T |
|
| Q |
100 |
atcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggctt |
199 |
Q |
| |
|
||||||||| || |||||||| ||||| ||||| ||||| | ||| ||| |||||| | |||||| ||||||||| |||||| | ||||| || || |
|
|
| T |
4135378 |
atcaaacaagtaggacccaaggacttccagagccagcgggagtcccccacaatactagacaacatttatggaaatttgagcaaattt-tctcttggactc |
4135476 |
T |
|
| Q |
200 |
gcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgt |
299 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| |||||||||||| ||||| | |||| |||||| ||| | |||||||| ||||||| || | |
|
|
| T |
4135477 |
actttcttgaatgcatgccaactaaaaagctcaagagattcactttcatctatttcctccattatgtatacttggttaactctatcccctctaattattt |
4135576 |
T |
|
| Q |
300 |
tcatatctctagtggtgatgactattctactacccgaaccaaagcatt |
347 |
Q |
| |
|
| ||||||| || ||||||| ||||||||| || |||||||| |||| |
|
|
| T |
4135577 |
gcttatctctggttgtgatgattattctactccctgaaccaaaccatt |
4135624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 4351636 - 4351473
Alignment:
| Q |
99 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
198 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||||| |||||||| |||| || ||||||| |||||||||| | |||||| ||| | || || |
|
|
| T |
4351636 |
tatcaaacaagtaggacccaaggacttcaagagctagcggcaaccctccagagtacttaactacatttatggaaatttcggaaaaatcttctttgggact |
4351537 |
T |
|
| Q |
199 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcatt |
262 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
4351536 |
cttttgcttgaatgcatgccaactaaaacgctcaagagattcactttcattcatttctttcatt |
4351473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 197 - 347
Target Start/End: Complemental strand, 6756752 - 6756602
Alignment:
| Q |
197 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaa |
296 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| ||||| |||||| ||||||||| ||| || | ||||||||||||||| |||||||| |
|
|
| T |
6756752 |
cttggttgcttgaatgcatgccaactgaaaagctcaagagattcgctttcatccatttcttttatttcataaacttgatcaactctataagatctaagaa |
6756653 |
T |
|
| Q |
297 |
tgttcatatctctagtggtgatgactattctactacccgaaccaaagcatt |
347 |
Q |
| |
|
||| ||||||| || ||||||| |||||||||||||| |||||| |||| |
|
|
| T |
6756652 |
gattcctatctcttgttgtgatgattattctactacccggaccaaaccatt |
6756602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 6726314 - 6726157
Alignment:
| Q |
100 |
atcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggctt |
199 |
Q |
| |
|
|||| ||||||||||||||| ||||| || ||||| |||||||| |||||||| |||| |||| | | ||| || ||||||||| ||| | || ||| |
|
|
| T |
6726314 |
atcagacaaatatgacccaatgacttcaagtgctagtggcaatcccccagaatatgcaatcacatctgttgaatgtttagcaaaatcttcttttggactt |
6726215 |
T |
|
| Q |
200 |
gcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
257 |
Q |
| |
|
| |||||||||||||||||| || ||||||| | |||||||||||| |||||||| |
|
|
| T |
6726214 |
gattgcttgaatgcatgccaactgaaaagcttgagagattcactttcatccatttctt |
6726157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 347
Target Start/End: Complemental strand, 8413107 - 8412957
Alignment:
| Q |
197 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaa |
296 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| | ||||||||||| ||||||||| ||||| || | ||||||||||||| || | |||||| |
|
|
| T |
8413107 |
cttggttgcttgaatgcatgccaactgaaaagcttgagagattcactttcgtccatttcttttattgtatacacttgatcaactctacatgatgtaagaa |
8413008 |
T |
|
| Q |
297 |
tgttcatatctctagtggtgatgactattctactacccgaaccaaagcatt |
347 |
Q |
| |
|
| ||| ||||| || ||||||| ||||||||| |||| |||||| |||| |
|
|
| T |
8413007 |
gatgcatctctcttgttgtgatgattattctacttcccggaccaaaccatt |
8412957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4343445 - 4343371
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaataca |
75 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || |||| | | || |||||| |||||||||| ||||||||| |
|
|
| T |
4343445 |
tttaaaccatcgtagcttatttttaacttcttatgcacttcatcattgggaatttttttgagtttctccaataca |
4343371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 347
Target Start/End: Original strand, 6535313 - 6535482
Alignment:
| Q |
178 |
agcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatca |
277 |
Q |
| |
|
||||||||| ||| | || |||| || ||||||||||||||| || ||||| ||| | |||||||||| |||||||| ||| | || | ||||||| |
|
|
| T |
6535313 |
agcaaaatcttctatcggacttggtttcttgaatgcatgccaactgaaaagagcaagagcttcactttcatccatttcttctattttatacacttgatca |
6535412 |
T |
|
| Q |
278 |
actctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaagcatt |
347 |
Q |
| |
|
||||| || |||||||| | |||||| || || ||||||| ||||||||| ||||||||||| |||| |
|
|
| T |
6535413 |
actctgcatgatctaagaagatgcatatcccttgttgtgatgattattctactccccgaaccaaaccatt |
6535482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 6714293 - 6714204
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgtt |
90 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||| ||||||||| | | |||||| | ||||||||| ||||| || |||| ||| |||||| |
|
|
| T |
6714293 |
tttaaaccatcaaagcttactttcagcttcttctgtacttgatcatgaggaatacatttgagtttctccaaaactttctgccactctgtt |
6714204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 6500033 - 6500077
Alignment:
| Q |
202 |
ttgcttgaatgcatgccagctaaaaagctcaattgattcactttc |
246 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6500033 |
ttgcttgaatgcatgccagctgaaaagctcaagagattcactttc |
6500077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 6814153 - 6814001
Alignment:
| Q |
105 |
acaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttg |
204 |
Q |
| |
|
||||||| ||||| || ||||| || ||||| |||||||| |||||||| ||| |||| | | || || ||||||||| ||| | || |||| ||| |
|
|
| T |
6814153 |
acaaataggacccgaggacttcaagtgctagtggcaatcccccagaataagaaatcacatctgttaaatgtttagcaaaatcttctatcggacttggttg |
6814054 |
T |
|
| Q |
205 |
cttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
257 |
Q |
| |
|
||||||||||||||| || ||||||| || |||||||||||| |||||||| |
|
|
| T |
6814053 |
cttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt |
6814001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6674487 - 6674409
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattct |
79 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||||||||||| | | || || | ||||||||||||||| ||||||| |
|
|
| T |
6674487 |
tttaaaccatcgaagcttactttcagcttcttttgtacttgatcatgggggatacatttgagtttttccaaaacattct |
6674409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 6751134 - 6751068
Alignment:
| Q |
197 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattg |
263 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
6751134 |
cttggttgcttgaatgcatgccaactgaaaagctcaagagattcactttcgttcatttcttttattg |
6751068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 6547564 - 6547644
Alignment:
| Q |
178 |
agcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttcttt |
258 |
Q |
| |
|
||||||||| ||| | || |||| |||||||||||||||||| || || ||||||| |||||| ||||| ||||||||| |
|
|
| T |
6547564 |
agcaaaatcttctattggacttggttgcttgaatgcatgccaactgaatagctcaagagattcaatttcatccatttcttt |
6547644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 342
Target Start/End: Original strand, 6589698 - 6589862
Alignment:
| Q |
178 |
agcaaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatca |
277 |
Q |
| |
|
||||||||| ||| | || |||| ||| |||||||||||||| ||||| |||| || ||||||| ||| |||||||| ||||| || ||||||| | |
|
|
| T |
6589698 |
agcaaaatcttcttttggacttggttgtttgaatgcatgccaactaaacagcttaagtgattcaattttgtccatttcttctattgtatacatttgataa |
6589797 |
T |
|
| Q |
278 |
actctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaa |
342 |
Q |
| |
|
|||| | | |||||||| | ||||||||| || ||||| | ||||||||| |||| |||||| |
|
|
| T |
6589798 |
actccacacaatctaagaagatgcatatctcttgttgtgattattattctactccccggaccaaa |
6589862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 6624109 - 6624169
Alignment:
| Q |
197 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
257 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| |||||||| ||| |||||||| |
|
|
| T |
6624109 |
cttggttgcttgaatgcatgccaactgaaaagctcaagagattcactctcatccatttctt |
6624169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 6647269 - 6647185
Alignment:
| Q |
198 |
ttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactct |
282 |
Q |
| |
|
||||||| ||||||||| ||| ||||||| |||||||||||||||||| || |||||||| | | ||||| || |||||||| |
|
|
| T |
6647269 |
ttgcttggttgaatgcagcccaattaaaaagttcaattgattcactttcatccaattctttcactttatatatatggtcaactct |
6647185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 6794731 - 6794671
Alignment:
| Q |
197 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
257 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| || |||||||||||| |||||||| |
|
|
| T |
6794731 |
cttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt |
6794671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 5075229 - 5075557
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||| | |||||||||||| ||||||| ||||||||| || ||| |||| || || |
|
|
| T |
5075229 |
tttaaaccatcatagcttatttttaacttcttctgcacttgatcattaggaattcttatgagtttctccaatacacacttccactctgctatccccc-ta |
5075327 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| | ||||||||| |||||| |||||||||| ||| |||| |||| |
|
|
| T |
5075328 |
tcaaacaaatatgacccaatgacttgtagagctagcggcaatcccccagaatactccactacatttcttgaaattccagcaaaatcttctataggacttg |
5075427 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || | | ||| |||||||||| |||||||| || | |
|
|
| T |
5075428 |
cttgtttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctttcattttgcacacttggtcaactctattccctctaagtatatg |
5075527 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctact |
330 |
Q |
| |
|
|||||| || || ||||| | ||||||||| |
|
|
| T |
5075528 |
catatccctggttgtgataattattctact |
5075557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 5395547 - 5395208
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||| | |||||||||||||||| |||||| |||||| || ||| |||| || | |
|
|
| T |
5395547 |
tttaaagcatcatagcttatttttaacttcttttgaacttgatcattaggaattcttttgattttttctaatacacacttccactctgctaatcccaat- |
5395449 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|||||||||| ||| ||||| ||||| |||||||| |||||||| ||||||||||||| ||||||||| |||||||| |||||||| ||||| || || | |
|
|
| T |
5395448 |
tcaaacaaatgtgatccaaggacttccagagctagtggcaatcccccagaatactcaactacatttcttgaaatttctgcaaaatcttctcttggactcg |
5395349 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| ||| | ||||||||||||| |||| ||||| |||||||||| |||||||| ||||| |
|
|
| T |
5395348 |
cttgcttgaatgcatgccaactaaagagctcaattgattcgcttccgtccatttctttcattttgtaaatttggtcaactctattacctctaagtatgtt |
5395249 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctactacccgaaccaa |
341 |
Q |
| |
|
|||||||||| | ||||||| |||||| || || ||||||| |
|
|
| T |
5395248 |
catatctctacttgtgatgattattctgctccctgaaccaa |
5395208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 5183457 - 5183775
Alignment:
| Q |
8 |
catcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaaca |
107 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||| || || ||||||| || ||||||||| |
|
|
| T |
5183457 |
catcgtagcttatttttaacttcttttgtacttgatcattaggaattcttttgagtttttctaatgcacacttccattcttctatcccca-tatcaaaca |
5183555 |
T |
|
| Q |
108 |
aatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgctt |
207 |
Q |
| |
|
||||||| ||||| ||||| |||||||| |||||||| ||||||||||||| ||||||||| |||||| |||||||| | |||||||| | ||||||||| |
|
|
| T |
5183556 |
aatatgatccaaggacttccagagctagtggcaatcccccagaatactcaactacatttcttgaaattccagcaaaaccttctctaggacctgcttgctt |
5183655 |
T |
|
| Q |
208 |
gaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttcatatct |
307 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||| |||| ||||||| |||| | ||| |||||||||| |||||||| || ||||||| | |
|
|
| T |
5183656 |
gaatgcatgccaactaaatagctcaattgattcgctttcatccattattttcattttgtaaacttggtcaactctattacctctaagtattttcatattt |
5183755 |
T |
|
| Q |
308 |
ctagtggtgatgactattct |
327 |
Q |
| |
|
||||| ||||||| |||||| |
|
|
| T |
5183756 |
ctagttgtgatgattattct |
5183775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 5342198 - 5341858
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||| || | ||||||| | || |
|
|
| T |
5342198 |
tttaaaccatcatagcttatttttaacttcttttgtacttgattgttaggaattcttttaagtttttctaatgcacagttccattctact-gcccctcta |
5342100 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|||||||||||||| || || ||||| | ||||||||||||||| ||| ||||||| | ||||||| |||||| || ||||| ||||||| || |||| |
|
|
| T |
5342099 |
tcaaacaaatatgagcctagaacttccaaagctagcggcaatccaccacaatactcgactacattttcagaaattccaacaaaaccatctcttggacttg |
5342000 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||| ||||||| || || |||||||||||| |||| || |||||||||| |||||||| || || |
|
|
| T |
5341999 |
cttgcttgaacgcatgccaactaaatagctcaagtgattcatttgcatccatttctttcatcacatatacctggtcaactctattccctctaagtatatt |
5341900 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctactacccgaaccaaa |
342 |
Q |
| |
|
|||||||||||| |||||||||||| |||| || |||||||| |
|
|
| T |
5341899 |
catatctctagttgtgatgactattttactccctgaaccaaa |
5341858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 5068572 - 5068912
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||| |||||||||||||| | ||||||| ||||||||| |||||||||||||||||||| ||||||||| | | ||||||||||| || |
|
|
| T |
5068572 |
tttaaagcatcatagcttattcttaacttctcctgtacttgattattaggaattcttttgagtttgtccaatacacttttccattctgttacctctc-ta |
5068670 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||| |||||||| ||||||||||||| || |||||||||||| |||||||||| | | |||| | | |
|
|
| T |
5068671 |
tcaaacaaatatgacccaaggacttccaaagctagtggcaatcccccagaatactcaacgacctttctggaaattgcagcaaaatcttttgtaggacccg |
5068770 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| |||||||||||||||| ||| | ||||||| || ||| || || |||||||| || | ||| || | |
|
|
| T |
5068771 |
cttgcttgaatgcgtgccaactaaatagcttaattgattcactttcatccatgtgtttcattttgaatactttattaactctattcccacgaagtatatg |
5068870 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctactacccgaaccaaa |
342 |
Q |
| |
|
|||| || |||||||||| ||||||||| ||||||||||| |
|
|
| T |
5068871 |
tctatcccttgtggtgatgattattctacttcccgaaccaaa |
5068912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 5148457 - 5148805
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||| | |||||||||||||| |||||||| || |||||| | || ||||||||||||||||| ||||||||| || ||| ||| ||| || |
|
|
| T |
5148457 |
tttaaatcgtcatagcttatttttaacttcttctgcacttgatcattgggaattcttttgagtttgtccaatacacacttccactctattatccccc-ta |
5148555 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
||||| ||||| ||||||| ||||| ||||||||||||| || || ||||||||| || ||||||| ||| |||||||||| |||||||| || | |
|
|
| T |
5148556 |
tcaaataaatacgacccaataacttccagagctagcggcagtcgccccaaatactcaactatccttctggatattccagcaaaatcttctctaggactcg |
5148655 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||| |||||| || |||||||||| ||||| || || | |
|
|
| T |
5148656 |
cttgcttgaatgcatgccaactaaaaagcataattgattcaccttcatccatttctttcattttgtatacatggtcaactctattccctctcagtatatg |
5148755 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctactacccgaaccaaagcattgac |
350 |
Q |
| |
|
|||||||||||| ||||| | ||||||||| ||||| ||||| ||||||| |
|
|
| T |
5148756 |
catatctctagttgtgataattattctacttcccgagccaaaccattgac |
5148805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5356114 - 5356355
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||| || | | ||| || | || | |
|
|
| T |
5356114 |
tttaaaccatcatagcttatttttagtttcttttgtacttggttgttaggaattcttttgagtttctccaaggcactgtaccactccgctacctccc-tg |
5356212 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||| | | |||| |||| |
|
|
| T |
5356213 |
tcgaacaaatacgacccaaggacttctagagccagcggtaatcctccagaatactcaactacatttctggaaattccagctaaatcttttgtaggacttg |
5356312 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcact |
243 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
5356313 |
cttgcttgaatgcatgccaactaaatagctcaattgattcact |
5356355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5424257 - 5424012
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||| |||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||| || | | ||||||||| | | |
|
|
| T |
5424257 |
tttaaagcatcatagcttattcttaacttctcctgtacttgattattaggaattcttttgagtttttccaatgcacttttccattctgt-aatccctctg |
5424159 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||| | |||||| |||||||| |||||||| |||| ||||||||| ||||||||||||||||| | | |||| || | |
|
|
| T |
5424158 |
tcgaacaaatatgacccaaggacttccaaagctagtggcaatccaccagaataatcaactacatttctagaaatttcagcaaaatcttttgtaggactcg |
5424059 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttca |
247 |
Q |
| |
|
|||||||||| |||||||| || || ||||||||||||||||||||| |
|
|
| T |
5424058 |
cttgcttgaaggcatgccaacttaatagctcaattgattcactttca |
5424012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5094545 - 5094300
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| |||| |||| |||||||||||||||||||| |||||| || | | ||||||||||| || |
|
|
| T |
5094545 |
tttaaagcatcatagcttattcttaacttcttctgtaattgattattaggaattcttttgagtttgtccaatgcacttttccattctgttacctccc-ta |
5094447 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|| || |||||||||||||| ||||| | ||||| ||||| || ||||||||||||| ||||||||| ||||||||| ||||||| | | |||| || | |
|
|
| T |
5094446 |
tcgaataaatatgacccaaggacttccaatgctagtggcaaccccccagaatactcaactacatttctagaaatttcaacaaaatcgtttgtaggactcg |
5094347 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttca |
247 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
5094346 |
cttgcttgaatgcatgccaactaaataactcaattgattcactttca |
5094300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 5368964 - 5368624
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| ||||||||| |||||||||||||||||||| |||||| || | | ||||||||||| | |
|
|
| T |
5368964 |
tttaaagcatcatagcttattcttaacttcttctgtacttgattattaggaattcttttgagtttgtccaatgcacttttccattctgttatccctc-tg |
5368866 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||| |||||||| ||||||||||| | ||||||||| ||||||| ||||||||| | ||| || | |
|
|
| T |
5368865 |
tcaaacaaatatgacccaataacttccaaagctagtggcaatcccccagaatactccactacatttctagaaattttagcaaaatctttcgcaggactcg |
5368766 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
||||||| ||||||||||| || || ||||||||||||||||||||| ||| | ||||||| || ||| || || ||| |||| || ||||| || | |
|
|
| T |
5368765 |
cttgcttaaatgcatgccaactgaatagctcaattgattcactttcatccatgtgtttcattttgaatactttattaaccctattcccactaagtatatg |
5368666 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctactacccgaaccaaa |
342 |
Q |
| |
|
| ||||| |||||||||| |||||| || ||||||||||| |
|
|
| T |
5368665 |
tctgtctcttgtggtgatgattattctgcttcccgaaccaaa |
5368624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 5691610 - 5691869
Alignment:
| Q |
2 |
ttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntat |
101 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||| ||||||||| ||||||||| | |||||| ||||||||||||||| | | |
|
|
| T |
5691610 |
ttaaaccatcatagcttattcttaactttttttgtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcc-tgt |
5691708 |
T |
|
| Q |
102 |
caaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctaggg-cttg |
200 |
Q |
| |
|
|||| |||| ||||||||| ||||| | |||||| |||||||| ||||||||||||| ||||||| |||| | | |||||||||| | ||| ||| |||| |
|
|
| T |
5691709 |
caaataaatgtgacccaaggacttccaaagctagtggcaatcccccagaatactcaactacatttttggacaatgcagcaaaatc-tttcttgggtcttg |
5691807 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcatt |
262 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| ||||||||| ||||| ||| ||||||||| |
|
|
| T |
5691808 |
cttgcttgaaagcatgccaactaaagagctccattgattcattttcattcatctctttcatt |
5691869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 3 - 299
Target Start/End: Complemental strand, 5175368 - 5175073
Alignment:
| Q |
3 |
taaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatc |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||| | ||||||| | ||||||||||| | || |
|
|
| T |
5175368 |
taaaccatcatagcttatttttaacttcttttgtactttgtcattaggaattctttctagtttcttcaatacacaattccattctgttaccttct-tctc |
5175270 |
T |
|
| Q |
103 |
aaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgct |
202 |
Q |
| |
|
||||||||| |||||| ||||||||||||| ||||||||| |||||||||| || |||||| ||||||||||| |||| || ||| | || || || |
|
|
| T |
5175269 |
aaacaaatagcgcccaagaacttctagagctaacggcaatcccccagaatacttaacaacatttttggaaatttcaacaaattcttctatgggactcact |
5175170 |
T |
|
| Q |
203 |
tgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgt |
299 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||||||||| ||||||||| | | ||||| || |||||||||| |||||||| |||| |
|
|
| T |
5175169 |
tgtttgaatgcatgccaattaaagagctcaattgattcactttcatccatttctttattagagtatactttgtcaactctatcccctctaagtatgt |
5175073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5104370 - 5104615
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||| | | | ||||||| ||| || |
|
|
| T |
5104370 |
tttaaaccatcgtagcttattcttaacttcttttgtacttgattattaggaattcttttgagtttgtccaatgtacttttccattctcttacttctc-ta |
5104468 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|| || |||||||||||||| ||||| | ||||| ||||| || ||||||||||||| ||||||||| |||| |||| |||||| | | | || || |
|
|
| T |
5104469 |
tcgaataaatatgacccaaggacttccaatgctagtggcaaccccccagaatactcaactacatttctagaaaattcaataaaatcttttgtcggactca |
5104568 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttca |
247 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5104569 |
cttgcttgaatgcatgccaactaaatagctcaattgattcactttca |
5104615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 299
Target Start/End: Complemental strand, 5277195 - 5276900
Alignment:
| Q |
3 |
taaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatc |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||| | ||||||| | ||||||||||| | || |
|
|
| T |
5277195 |
taaaccatcatagcttatttttaacttcttttgtactttgtcattaggaattctttctagtttcttcaatacacaattccattctgttaccttct-tctc |
5277097 |
T |
|
| Q |
103 |
aaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgct |
202 |
Q |
| |
|
||||||||| |||||| ||||||||||||| ||||||||| ||||||||| || |||||| ||||||||||| |||| || ||| | || || || |
|
|
| T |
5277096 |
aaacaaatagcgcccaagaacttctagagctaacggcaatcccccagaatacataacaacatttttggaaatttcaacaaattcttctatgggactcact |
5276997 |
T |
|
| Q |
203 |
tgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgt |
299 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||| ||||| ||||||||| | | ||||| || |||||||||| |||||||| |||| |
|
|
| T |
5276996 |
tgtttgaatgcatgccaattaaagagctcaattgattcattttcatccatttctttattagagtatactttgtcaactctattccctctaagtatgt |
5276900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5133403 - 5133648
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||||||| |||||||||||| ||||||| ||||||||| | ||| || ||| || |
|
|
| T |
5133403 |
tttaaagcatcatagcttatttttagcttcttttgtacttgattattaggaattcttctgagtttctccaatacacattgccactcgattacactcc-ta |
5133501 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|| | ||||||||||||||| |||||||||||||| |||||||| ||||||||||||| ||| | ||| ||||||||||||||||| | | | || | | |
|
|
| T |
5133502 |
tctagcaaatatgacccaaggacttctagagctagaggcaatcccccagaatactcaactacgtctctagaaatttcagcaaaatcttttgtgggagtcg |
5133601 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttca |
247 |
Q |
| |
|
| | ||||||||||||||| ||||| | ||||||||| ||| ||||| |
|
|
| T |
5133602 |
cattcttgaatgcatgccaactaaataactcaattgactcattttca |
5133648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5158999 - 5159244
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||| |||| ||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||| || | | ||||||||||| || |
|
|
| T |
5158999 |
tttaaagcatcgtagcttattcgtaacttcttatgtacttgattattaggaattcttttgagtttgtccaacgcacttttccattctgttacctccc-ta |
5159097 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
| || |||| |||||| || ||||| | ||||| ||||| || |||||||||| || ||||||||| ||||||||| ||||||| | | |||| || | |
|
|
| T |
5159098 |
ttgaataaatgtgaccctaggacttccaatgctagtggcaaccccccagaatacttaactacatttctagaaatttcaacaaaatcgtttgtaggactcg |
5159197 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttca |
247 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5159198 |
cttgcttgaatgcgtgccaactaaatagctcaattgattcactttca |
5159244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5382153 - 5381913
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| | | || |||||| |||||| ||| ||||||||| || ||| |||| || | |
|
|
| T |
5382153 |
tttaaaccatcatagcttatttttaacttccgttgtacttcatcattgggaattattttgattttctccaatacacacttccaatctgctactcccctt- |
5382055 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
||||||||| | || ||||| |||||||||||||| |||||||| ||||| || |||| || | | | |||||| | |||||| ||| |||| |||| |
|
|
| T |
5382054 |
tcaaacaaaaaagaaccaaggacttctagagctagaggcaatcccccagagtagtcaactatttctttacaaattttaaaaaaatcttctgtaggccttg |
5381955 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcac |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5381954 |
gttgcttgaatgcatgccagctaaaaagctcaattgattcac |
5381913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 99 - 282
Target Start/End: Original strand, 5261741 - 5261924
Alignment:
| Q |
99 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggct |
198 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||| ||||||| ||| || | || |||||| | |||| || |
|
|
| T |
5261741 |
tatcaaacaaataagacccaaggacttcgagagctagcggcaatcctccacaatattcaactacatttttggtaaatccaataaaatctcttgtaggact |
5261840 |
T |
|
| Q |
199 |
tgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactct |
282 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||||||||||| ||||| |||| | ||||| ||||||||| |||||||| |
|
|
| T |
5261841 |
cgctttcttgaatgcattccaactaaaaagctcaattgattcattttcattcattgttgtcattttgtatattttgtcaactct |
5261924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 5348872 - 5348706
Alignment:
| Q |
8 |
catcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaaca |
107 |
Q |
| |
|
|||| ||||||||| | ||||| | ||||||||| |||||||||||||||||||| ||||||||| | | ||||||||||| ||||||||| |
|
|
| T |
5348872 |
catcgtagcttattcttaacttttcctgtacttgattattaggaattcttttgagtttgtccaatacacttttccattctgttacccctc-tatcaaaca |
5348774 |
T |
|
| Q |
108 |
aatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatt |
175 |
Q |
| |
|
| |||||||||| ||||| | |||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5348773 |
ataatgacccaaggacttccaaagctagtggcaatcctccagaatactcaactacatttctggaaatt |
5348706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 330
Target Start/End: Complemental strand, 5431909 - 5431583
Alignment:
| Q |
3 |
taaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatc |
102 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| | || |||||| |||||||||| |||| |||| | ||||||||||| | || |
|
|
| T |
5431909 |
taaaccatcatagcttatttttaacttattttgtactttattattgggaattgttttgagtttctccagtacacatttccattctgttacatccc-tctc |
5431811 |
T |
|
| Q |
103 |
aaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgct |
202 |
Q |
| |
|
| |||||||| |||||| ||||||||||||||||||||||| | |||||| || ||||||| ||||||||| |||| || || | || || || |
|
|
| T |
5431810 |
atacaaatatcgcccaagaacttctagagctagcggcaatcccgcggaatacataacggcatttctagaaatttcaacaaattctgctttgggactcact |
5431711 |
T |
|
| Q |
203 |
tgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgttca |
302 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||| ||| ||||| ||| ||| |||||||| |||||||||| ||||| || || | || |
|
|
| T |
5431710 |
tgcttgaatgcatgccatataaaaagctcaagtgattcactgtcatccatttttttatttgagtatatttcgtcaactctatcccctctgagtatatgca |
5431611 |
T |
|
| Q |
303 |
tatctctagtggtgatgactattctact |
330 |
Q |
| |
|
||| ||| || ||||| | ||||||||| |
|
|
| T |
5431610 |
tatttctggttgtgataattattctact |
5431583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5445584 - 5445339
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||||||||||||| || || | |||||||| || |||||| | | |||||||||||||||| | ||||||||| ||||| |||| | || |
|
|
| T |
5445584 |
tttaaaccatcataactcatccttaacttcttctgcacttgatcataaggaattcttttgagtgtctccaatacaagttcccactctgat-tccgtctta |
5445486 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
| ||||||||| |||||||| ||||| ||||||||||||||||| ||||||| |||| ||||||| |||||||| | ||||||| | | |||| | | |
|
|
| T |
5445485 |
ttaaacaaataagacccaaggacttcaagagctagcggcaatccctcagaatattcaactacatttttggaaattctaacaaaatcttttgtaggacacg |
5445386 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttca |
247 |
Q |
| |
|
|| |||||||||||| ||| ||||||||||| ||||| ||||||||| |
|
|
| T |
5445385 |
ctcgcttgaatgcattccaactaaaaagctcgattgactcactttca |
5445339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 5285738 - 5285805
Alignment:
| Q |
99 |
tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacattt |
166 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
5285738 |
tatcaaacaaataagacccaaggacttcgagagctagcggcaatcctccacaatattcaactacattt |
5285805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 5261651 - 5261718
Alignment:
| Q |
8 |
catcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaataca |
75 |
Q |
| |
|
||||||| |||||| | |||||||| || |||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
5261651 |
catcataacttattcttaacttcttctgcacttgatcattaggaattcttttgagtttctccaataca |
5261718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 36215390 - 36215738
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||| ||| |||||||| ||||| ||||||||||||||||| | || ||||||||||||||||| ||||||||| || ||| ||| ||| || |
|
|
| T |
36215390 |
tttagaccttcatagctcatttttaacttcttttgtacttggtcattgggaattcttttgagtttgtccaatacacacttccactctattatccccc-ta |
36215488 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| ||| | | ||||||||||||| |||||| ||||||||| |||||||||| ||| | || || |
|
|
| T |
36215489 |
tcaaacaaatatgacccaaggacttccagagctaacggtagttgcccagaatactcaactacattgctggaaattccagcaaaatcttctttgggcctca |
36215588 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactctatatcctctaagaatgtt |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||| |||||||| || | |
|
|
| T |
36215589 |
cttgcttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctttcattgcgtatacttggtcaactctattccctctaagtatatg |
36215688 |
T |
|
| Q |
301 |
catatctctagtggtgatgactattctactacccgaaccaaagcattgac |
350 |
Q |
| |
|
| |||||||||| ||||||| ||||||||| ||| |||||| ||||||| |
|
|
| T |
36215689 |
cctatctctagttgtgatgattattctactccccacaccaaaccattgac |
36215738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 18929291 - 18929231
Alignment:
| Q |
202 |
ttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcatt |
262 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| | || ||||||||||||| |
|
|
| T |
18929291 |
ttgcttgaatgcatgccaactaaaaagctcaagagattcattgtcgtccatttctttcatt |
18929231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 34727435 - 34727495
Alignment:
| Q |
202 |
ttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcatt |
262 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| | || ||||||||||||| |
|
|
| T |
34727435 |
ttgcttgaatgcatgccaactaaaaagctcaagagattcattgccatccatttctttcatt |
34727495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 22585826 - 22586088
Alignment:
| Q |
8 |
catcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnntatcaaaca |
107 |
Q |
| |
|
||||||| |||||| | |||||||| || |||||| | |||||||||||||||||||| ||||||||| | ||||||||||| || |||||| |
|
|
| T |
22585826 |
catcataacttattcttaacttcttctgcacttgatcattaggaattcttttgagtttctccaatacacattgccattctgttacccctc-tagcaaaca |
22585924 |
T |
|
| Q |
108 |
aatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttgcttgctt |
207 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| ||||||||||| | || ||||| |||||||||||| |||||| || | || || |||||||| |
|
|
| T |
22585925 |
aataacgcccaaggacttccagagctagcggcaaccctccagaataattaaccacattcatggaaatttcagaaaaatctactttgggtctcgcttgctt |
22586024 |
T |
|
| Q |
208 |
gaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatt |
271 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| ||||||||| |||| || ||||| |||||||| |
|
|
| T |
22586025 |
gaatgcattccaactaaaaagctcaattgactcactttcattcattactgtcattatgtatatt |
22586088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 8876305 - 8876079
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttannnnnnnta |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||||||| | || || ||| |||||||||||||||||||| | ||| || | || | |
|
|
| T |
8876305 |
tttagaccatcatagcttatttttaacttctcatgtacttgatcattggggatttttttgagtttttccaatacacatttccactcggctacccccctt- |
8876207 |
T |
|
| Q |
101 |
tcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctctagggcttg |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| | |||||||| ||||||||||||| |||||||||||| ||| || |||||| |||||||| || | |
|
|
| T |
8876206 |
tcaaacaaatatgatccaagaacttctagagctggtggcaatcccccagaatactcaactacatttctggacattccaacaaaattttctctaggactcg |
8876107 |
T |
|
| Q |
201 |
cttgcttgaatgcatgccagctaaaaag |
228 |
Q |
| |
|
||||||||| |||||||| |||||||| |
|
|
| T |
8876106 |
gttgcttgaacgcatgccaactaaaaag |
8876079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 10345 - 10407
Alignment:
| Q |
181 |
aaaatcatctctagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcact |
243 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10345 |
aaaatcatctctaggcctatcttgcttgaatgcatgccaactaaaaagctcaattgattcact |
10407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 10166 - 10240
Alignment:
| Q |
1 |
tttaaaccatcatagcttattttcaacttcttttgtacttgaccgttaggaattcttttgagtttttccaataca |
75 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |||||||| | | || |||||| |||||| ||| ||||||||| |
|
|
| T |
10166 |
tttaaaccatcatagcttacttttaacttccgttgtacttcatctttgggaattattttgattttctccaataca |
10240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 11572 - 11632
Alignment:
| Q |
197 |
cttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctt |
257 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| || |||||||||||| |||||||| |
|
|
| T |
11572 |
cttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt |
11632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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