View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18700_low_16 (Length: 362)

Name: NF18700_low_16
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18700_low_16
NF18700_low_16
[»] chr7 (2 HSPs)
chr7 (1-362)||(41875704-41876065)
chr7 (158-209)||(5269468-5269519)
[»] chr2 (1 HSPs)
chr2 (158-202)||(3423849-3423893)
[»] chr1 (4 HSPs)
chr1 (160-212)||(36641810-36641862)
chr1 (314-361)||(24817944-24817991)
chr1 (220-274)||(24817795-24817849)
chr1 (158-198)||(45234146-45234186)
[»] chr8 (3 HSPs)
chr8 (300-362)||(40868457-40868519)
chr8 (161-202)||(31705029-31705070)
chr8 (160-209)||(41620374-41620423)
[»] chr4 (1 HSPs)
chr4 (162-202)||(1404367-1404407)
[»] chr3 (1 HSPs)
chr3 (158-214)||(32069084-32069139)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 41876065 - 41875704
Alignment:
Q  1 agtcacagttccctataacatattttagacatcaagttttacaagtttaataaataaaagtaacatgttgttgtagatcttattattatagctcaaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41876065 agtcacagttccctataacatattttagacatcaagttttagaagtttaataaataaaagtaacatgttgttgtagatcttattattatagctcaaaaaa 41875966  T
Q  101 tcaattcaacactgaaaaatgattataacggataaaaattaggttatagcttacattaaataatttgaccttattttatcttttagtacagaaataactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41875965 tcaattcaacactgaaaaatgattataacggataaaaattaggttatagcttatattaaataatttgaccttattttatcttttagtacagaaataactt 41875866  T
Q  201 atttataagtaagtacttatataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtcttggatgatctataatcaacattaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41875865 atttataagtaagtacttatataataagtgtttttgctactaacacaaaattaagttgtttatctaaataagtcttggatgatctataatcaacattaat 41875766  T
Q  301 caacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcacc 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41875765 caacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcacc 41875704  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 5269519 - 5269468
Alignment:
Q  158 aaataatttgaccttattttatcttttagtacagaaataacttatttataag 209  Q
    |||||||||||| ||||||||||||||| || |||||||| |||| ||||||    
T  5269519 aaataatttgactttattttatcttttattaaagaaataatttatatataag 5269468  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 3423849 - 3423893
Alignment:
Q  158 aaataatttgaccttattttatcttttagtacagaaataacttat 202  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||    
T  3423849 aaataatttgactttattttatcttttggtacaaaaataacttat 3423893  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 36641862 - 36641810
Alignment:
Q  160 ataatttgaccttattttatcttttagtacagaaataacttatttataagtaa 212  Q
    |||||||||| ||||||||||||||  || ||||||||||||| |||||||||    
T  36641862 ataatttgactttattttatcttttgttatagaaataacttatatataagtaa 36641810  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 24817944 - 24817991
Alignment:
Q  314 tctacctcagtatgcggccatcattagaagaaggtataaatatagcac 361  Q
    ||||||||| ||||||||||||||| |||||||||||| | |||||||    
T  24817944 tctacctcattatgcggccatcatttgaagaaggtatatagatagcac 24817991  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 24817795 - 24817849
Alignment:
Q  220 tataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtc 274  Q
    |||||||||||||| || ||| ||||| || |||| |||||||||||||||||||    
T  24817795 tataataagtgtttatgttacaaacactaagttaagttgtttatctaaataagtc 24817849  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 45234186 - 45234146
Alignment:
Q  158 aaataatttgaccttattttatcttttagtacagaaataac 198  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  45234186 aaataatttgactttattttatcttttattatagaaataac 45234146  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 40868457 - 40868519
Alignment:
Q  300 tcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcacc 362  Q
    ||||||||| ||| | |||||||||||||| ||||||||| ||| | ||||||| ||||||||    
T  40868457 tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcacc 40868519  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 31705070 - 31705029
Alignment:
Q  161 taatttgaccttattttatcttttagtacagaaataacttat 202  Q
    ||||||||| | |||||||||||||||||||||||| |||||    
T  31705070 taatttgacatgattttatcttttagtacagaaatagcttat 31705029  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 41620374 - 41620423
Alignment:
Q  160 ataatttgaccttattttatcttttagtacagaaataacttatttataag 209  Q
    |||||||||| ||||||||||||||  |||| ||||||||||| ||||||    
T  41620374 ataatttgactttattttatcttttgttacaaaaataacttatatataag 41620423  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 1404407 - 1404367
Alignment:
Q  162 aatttgaccttattttatcttttagtacagaaataacttat 202  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  1404407 aatttgaccttattttatcttttattatagaaatagcttat 1404367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 32069139 - 32069084
Alignment:
Q  158 aaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagt 214  Q
    |||| ||||||| ||||||||||||||  || ||||||||||||||||||| |||||    
T  32069139 aaattatttgactttattttatcttttt-tatagaaataacttatttataattaagt 32069084  T

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