View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_low_17 (Length: 354)
Name: NF18700_low_17
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 48 - 336
Target Start/End: Original strand, 49614431 - 49614717
Alignment:
| Q |
48 |
atttaatccttaacttcaaaatggacaatcttgtatatagatcaaaaacaaatttttcattttcaccttctttaaatatgagcaatcaacttcgtccnnn |
147 |
Q |
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| T |
49614431 |
atttaatccttaacttcaaaatggacaatcttgtatatagatcaaaaacaaatttttcattttcaccttctttaaatatgagcaatcaacttcgtccaaa |
49614530 |
T |
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| Q |
148 |
nnnnnnnnnnnnnctatgagcgatctactatttaataaaagtgataattggaatgttaccatgagagaatgtagcagatgatggcgcaactggttgagcg |
247 |
Q |
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| T |
49614531 |
aaaaagaaaaa--ctatgagcgatctactatttaataaaagtgataattggaatgttaccatgagagaatgtaacagatgatggcgcaactggttgagcg |
49614628 |
T |
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| Q |
248 |
tccagggacgagacctttcccgcaacagaaacatctagtgatgaggttaaggaaaacttgatttacaagaaggaaggagaaggcaacaa |
336 |
Q |
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| T |
49614629 |
tccagggacgagacctttcccgcaacagaaacatctagtgatgaggttaaggaaaacttgatttacaagaaggaaggagaaggcaacaa |
49614717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 161 - 332
Target Start/End: Original strand, 49609462 - 49609633
Alignment:
| Q |
161 |
ctatgagcgatctactatttaataaaagtgataattggaatgttaccatgagagaatgtagcagatgatggcgcaactggttgagcgtccagggacgaga |
260 |
Q |
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| T |
49609462 |
ctatgagcaatctactatttactaaatgtgataatcagaatgttaccatgagagaatgtacgagatgatggcacacgtgtttgcgcgaccggagatgaga |
49609561 |
T |
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| Q |
261 |
cctttcccgcaacagaaacatctagtgatgaggttaaggaaaacttgatttacaagaaggaaggagaaggca |
332 |
Q |
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| T |
49609562 |
cctttaccgcagcagaaacatctagtgatgaggttaaggaaaacttgatttataagaaggcagaagaaggca |
49609633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 49609403 - 49609446
Alignment:
| Q |
99 |
atttttcattttcaccttctttaaatatgagcaatcaacttcgt |
142 |
Q |
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| T |
49609403 |
attttttattttcaccttctttagctatgagcaatcaacttcgt |
49609446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 14335641 - 14335693
Alignment:
| Q |
189 |
tgataattggaatgttaccatgagagaatgtagcagatgatggcgcaactggt |
241 |
Q |
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| T |
14335641 |
tgataattggaaagttaccatgagagaacgtagaagaagatggcgcaagtggt |
14335693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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