View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18700_low_2 (Length: 640)
Name: NF18700_low_2
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Complemental strand, 34788312 - 34787691
Alignment:
| Q |
1 |
cctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaacgccacaaaaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788312 |
cctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctacctccttacacctttcctcaaactccgcaaacgccacaaaaagc |
34788213 |
T |
|
| Q |
101 |
agctctgcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34788212 |
agctctgcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaa |
34788113 |
T |
|
| Q |
201 |
tccaagcaccaaccctaggatgacacaaaacaagtctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34788112 |
tccaagcaccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataa |
34788013 |
T |
|
| Q |
301 |
ccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcctccgcaacattgccaagcatctcctccatatgaatatacttatac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34788012 |
ccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttatac |
34787913 |
T |
|
| Q |
401 |
cacaactgatcaacccgcggcaaaagagtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctcaacttgagcatacttca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34787912 |
cacaactgatcaacccgcggcaaaagagtaaccgcgcgatcccaaacattccgagcatgattaataaacttattcttcatctcaacttgagcatacttca |
34787813 |
T |
|
| Q |
501 |
accacaaagtatgattcttataatcaacttccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatccttctgcgactcttcccactgtgcatactt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34787812 |
accacaaagtatgattcttataatcaacttccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatccttctgcgactcttcccactgtgcatactt |
34787713 |
T |
|
| Q |
601 |
aatccaaacactaacattccac |
622 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
34787712 |
aatccaaacactaacattccac |
34787691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Original strand, 2292882 - 2293506
Alignment:
| Q |
1 |
cctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaacgccacaaaaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2292882 |
cctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcccgctcagcctccttacacctttcctcaaactccgcaaaagccacaaaaagc |
2292981 |
T |
|
| Q |
101 |
agctctgcttcctcatcatccgctagct---ccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataac |
197 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2292982 |
agctcagcttcctcatcatccgcaagcttctccaccgctctttcataaacattcctcgccttaggaacctcgccattcttcatctcaaacttcgcataac |
2293081 |
T |
|
| Q |
198 |
gaatccaagcaccaaccctaggatgacacaaaacaagtctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataaga |
297 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2293082 |
gtatccaagcaccaaccctaggatgacacaatacaaatctctcgaaaatccctctagctcgttcaatctcattatatctcagctcaaattttatataaga |
2293181 |
T |
|
| Q |
298 |
taaccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcctccgcaacattgccaagcatctcctccatatgaatatactta |
397 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2293182 |
tagccatccttgctgatccggcatccatttcatccatctctcaaaaacctgtctcgcccccgcaacattgccaagcatctcctccatatgaatatactta |
2293281 |
T |
|
| Q |
398 |
taccacaactgatcaacccgcggcaaaagagtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctcaacttgagcatact |
497 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
2293282 |
taccacaactgatccactcgtggcaaaagagtaacagcgcgatcccaaacattcctcgcatggttaataaacttattcttcatctcaacttcagcatact |
2293381 |
T |
|
| Q |
498 |
tcaaccacaaagtatgattcttataatcaacttccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatccttctgcgactcttcccactgtgcata |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2293382 |
tcaaccacaaagtatgattcttataatcaacttccaatgctcgttcccaaaccgaacgtgcacgtgtaaaatctttctgcgactcttcccactgtgcata |
2293481 |
T |
|
| Q |
598 |
cttaatccaaacactaacattccac |
622 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
2293482 |
cttaatccaaacactgacattccac |
2293506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 127 - 485
Target Start/End: Original strand, 33635664 - 33636022
Alignment:
| Q |
127 |
ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacac |
226 |
Q |
| |
|
|||||| ||||||||||||||| | || ||| ||||||| || ||||||||||||||||| || |||||||| | |||||||||||| ||||||||||| |
|
|
| T |
33635664 |
ctccacagctctttcataaacacttcttgccctaggaacttcaccattcttcatctcaaatttcgcataacgtaaccaagcaccaacactaggatgacat |
33635763 |
T |
|
| Q |
227 |
aaaacaagtctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccact |
326 |
Q |
| |
|
||||| ||||||||| ||||| ||||| || ||||| || | || ||| ||||||| ||||| | |||| | |||||||| |||||||| | |
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|
| T |
33635764 |
gtaacaaaaagctcgaaaattcctctaagtcgttcgatttcattgtactttagttcatattttatgtaagagagccatgcatgctgatcaggcatccatt |
33635863 |
T |
|
| Q |
327 |
tcatccatctctcgaaaaccagcctcgcctccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaag |
426 |
Q |
| |
|
|||||| |||||||||||| || | | || ||||||||||| |||| ||||||||| || |||| ||||||||| |||| |||||||| ||||| |
|
|
| T |
33635864 |
ccatccacctctcgaaaacctctctaactccggcgacattgccaagaatcttctccatatgtatgtactcataccacaattgatggacccgcggtaaaag |
33635963 |
T |
|
| Q |
427 |
agtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctcaa |
485 |
Q |
| |
|
| |||| ||||| || ||||||||| |||||||| | || ||||||||||||||| |
|
|
| T |
33635964 |
aataacagcgcgatcgtaaacattccttgcatgattgacgaatctattcttcatctcaa |
33636022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2598033 - 2598110
Alignment:
| Q |
1 |
cctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaa |
78 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||||| |||||| | ||||||| |||||||||||| |||| |
|
|
| T |
2598033 |
cctccccttcggaatataatcaattggaaatttataaatacacatcgcacactctgcctcattacacctttccacaaa |
2598110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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