View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_low_23 (Length: 272)
Name: NF18700_low_23
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 15804974 - 15805081
Alignment:
| Q |
1 |
aagtcacctgaaatttcagatgtgctacccatgtgttttcctaagcaagatcgaggtagtaagctttgtttatacattatcaatattttgtaaccaagag |
100 |
Q |
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| T |
15804974 |
aagtcatctgaaatttcagatgtgctaccgatgtgttttcctaagcaagatcgaggtagcaagctttgtttatacattatcaatattttgtaaccaagag |
15805073 |
T |
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| Q |
101 |
cctctcaa |
108 |
Q |
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||| |||| |
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| T |
15805074 |
cctatcaa |
15805081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 15763942 - 15764073
Alignment:
| Q |
1 |
aagtcacctgaaatttcagatgtgctacccatgtgttttcctaagcaagatcgaggtagtaagctttgtttatacattatcaatattttgtaaccaagag |
100 |
Q |
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| T |
15763942 |
aagtcatctgaaatttcagatgtgctacccatgtgtttttctaagctagatcaaggttgcatggtttgtttat---ttatcaatattttgtactcaggag |
15764038 |
T |
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| Q |
101 |
cctctcaattaaaggcagtgttagtgatttcataa |
135 |
Q |
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| T |
15764039 |
cctctcatttaaagggaatgttaaagatttcataa |
15764073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 15812773 - 15812874
Alignment:
| Q |
67 |
tgtttatacattatcaatattttgtaaccaagagcctctcaattaaaggcagtgttagtgatttcataaaaatataaaactatttttggcttggagtact |
166 |
Q |
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| T |
15812773 |
tgtttatacattatcaatatttcatattcaagagactctcctttgaaggcaatgttagtgatttcataaaactataaaacaatttttggcttggaatact |
15812872 |
T |
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| Q |
167 |
tg |
168 |
Q |
| |
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|| |
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| T |
15812873 |
tg |
15812874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 15812910 - 15812958
Alignment:
| Q |
215 |
atgagatgtgataaagaaaactcacatataatagaagactttgcctatg |
263 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
15812910 |
atgagatgtgataaggaaaacttacatataatagaagactttgcatatg |
15812958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 15805081 - 15805119
Alignment:
| Q |
227 |
aaagaaaactcacatataatagaagactttgcctatgct |
265 |
Q |
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| T |
15805081 |
aaagaaaactcacatataatagaagactttgcatatgct |
15805119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 15799527 - 15799572
Alignment:
| Q |
218 |
agatgtgataaagaaaactcacatataatagaagactttgcctatg |
263 |
Q |
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| T |
15799527 |
agatgtgataaggaaaactcacatatagtagaagactttgcatatg |
15799572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 263
Target Start/End: Original strand, 15697033 - 15697064
Alignment:
| Q |
232 |
aaactcacatataatagaagactttgcctatg |
263 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
15697033 |
aaactcacatataatagaagactttgcctatg |
15697064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 15722253 - 15722285
Alignment:
| Q |
231 |
aaaactcacatataatagaagactttgcctatg |
263 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
15722253 |
aaaactcacatgtaatagaagactttgcctatg |
15722285 |
T |
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