View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_low_29 (Length: 236)
Name: NF18700_low_29
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 50312059 - 50311921
Alignment:
| Q |
85 |
gtttctagctaacatatataatattcattattacatgacatacactactctacgattcatatttaatacattaagcattggaaagaatagattcaaaatt |
184 |
Q |
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| T |
50312059 |
gtttctagctaacatatataatattcattattacatgacatacactactctacgattcatatttaatacattaaacattagaaagaatagattcaaaatt |
50311960 |
T |
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| Q |
185 |
catgcatgtagttggttagtggtgttcttggtgattgat |
223 |
Q |
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| T |
50311959 |
catgcatgtagttggttagtggtgttcttggtgattgat |
50311921 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 40763581 - 40763653
Alignment:
| Q |
147 |
ttaatacattaagcattggaaagaatagattcaaaattcatgcatgtagttggttagtggtgttcttggtgat |
219 |
Q |
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| T |
40763581 |
ttaatacatgaagaattaggaagaatacattcaaaattcatgtatgtagttggttgatggtgtttttggtgat |
40763653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 10681804 - 10681761
Alignment:
| Q |
180 |
aaattcatgcatgtagttggttagtggtgttcttggtgattgat |
223 |
Q |
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| T |
10681804 |
aaattcatgcatgtagttggttagttgtgttcttggtgattgat |
10681761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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