View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_low_5 (Length: 496)
Name: NF18700_low_5
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 478
Target Start/End: Complemental strand, 33836078 - 33835616
Alignment:
| Q |
15 |
tcaagaaagtcactttgtccatcacattttgggtttcttaaatatcccaaagagtgttaaatgatgcaaatgatatttgagaactaaaatgcaagtataa |
114 |
Q |
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| T |
33836078 |
tcaagaaagtcactttgtccatcacatttagggtttcttaaatatcccaaagagtgttaaatgatgcaaatgatatttgagaactaaaatgcaagtataa |
33835979 |
T |
|
| Q |
115 |
gtgaaaagttaaaggcagttaaacataggtgaaattgcaagtaaaataagttgtttgattgactaaattttatctatagtgaaatttacaaatggtattt |
214 |
Q |
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| T |
33835978 |
gtgaaaagttaaaggcacttaaacataggtgaaat-gcaggtaaaataagttgtttgattgactaaattttatttatagtgaaatttacaaatggtattt |
33835880 |
T |
|
| Q |
215 |
atagaccaatgaaatttataagtgatgcaaatgattaattacctacactttatgatgcaaactagttgacaagctacatttgtctcactcgccaacgact |
314 |
Q |
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| T |
33835879 |
atagaccaatgaaatttataagtgatgcaaatgattaattacctacactttatgatgcaaactagttgacaagctacatttgtctcactcaccaacgact |
33835780 |
T |
|
| Q |
315 |
aagtgagttattaagctcctcgaacgaattaccctaacgataatttatgatttctcaactaaaattttgattgatcttcttccacgctgatagcacaatt |
414 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835779 |
aagtgagttattaagctcctcgaatgaattaccctaacgataatttatgatttctcagctaaaattttgattgatcttcttccacgctgatagcacaatt |
33835680 |
T |
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| Q |
415 |
tctctttaaataagtatagttgatttgccctaaccgcctttgatatattagctttctttctctg |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835679 |
tctctttaaataagtatagttgatttgccctaaccgcctttgatatattagctttctttctctg |
33835616 |
T |
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