View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18700_low_7 (Length: 463)
Name: NF18700_low_7
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 4 - 445
Target Start/End: Complemental strand, 45044465 - 45044032
Alignment:
| Q |
4 |
gatatgaattaaatttttcttttattgtgattacaaagaaaagaagaccataaacttctactttnnnnnnntaacgtcaattgtcgttgatgttttagac |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45044465 |
gatatcaattaaatttttcttttattgtgattacaaagac-----gaccataaacttctacttttaaaaaataacgtcaattgtcgttgatgttttagac |
45044371 |
T |
|
| Q |
104 |
aatttacaaatagtattctatctattagtacaaaatataaacaaaaacgaatcaaagaaaattaatgtatttgatttaaatacatcaattttatttcact |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45044370 |
aatttacaaatagtactctatctattagtacaa--tataaacaaaaatgaatcaaagaaaattaatgtatttgatttaaatacatcaattttgtttcact |
45044273 |
T |
|
| Q |
204 |
catttagtttatattttgtaggtgatgaaacatgaaatttggaaataatacaaactagtaggttataaaaaagtcttttatttctgctgcttaaatttcg |
303 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45044272 |
cgtttaatttatattttgtaggtgatgaaacatgaaatttggaaataagacaaactagtaggttataaaaa-gtcttttatttctgctgcttaaatttcg |
45044174 |
T |
|
| Q |
304 |
aggaaaaccacgaatttgtattattttgggttgacccctgcttctatcatcaagtcttccttaccttactataaataagtctcaaattatcatcttcact |
403 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45044173 |
aggaaaaccacgaatttgtactattttgggttgacccctgcttcgatcatcaagtcttccttaccttactataaataagtctcaaattatcatcttcact |
45044074 |
T |
|
| Q |
404 |
tcataacttaacttcaaattgaaaattatctcttcctattac |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45044073 |
tcataacttaacttcaaattgaaaattatctcttcctattac |
45044032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 270 - 443
Target Start/End: Complemental strand, 46176287 - 46176111
Alignment:
| Q |
270 |
aaaaaagtcttttatttctgctgcttaaatttcgaggaaaaccacgaatttgtattattttgggttgacccctgcttctatcatcaagtcttccttacct |
369 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46176287 |
aaaaaagtctttaatttctgctgcttaaatttcgaggaaaatcacgaatttgtacttgtttgggttgacccctgcttctatcatcaagtcttccttacct |
46176188 |
T |
|
| Q |
370 |
---tactataaataagtctcaaattatcatcttcacttcataacttaacttcaaattgaaaattatctcttcctatt |
443 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46176187 |
tgctactataaataagccacaaattatcatcttcacttcataacttaacttcaaattgaaaattatctcttcctatt |
46176111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 45036708 - 45036624
Alignment:
| Q |
346 |
tctatcatcaagtcttccttacctta--ctataaataagtctcaaattatcatcttcacttcataacttaacttcaaattgaaaa |
428 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||||| |||| |
|
|
| T |
45036708 |
tctatcatcaactcttccataccttatactataaataatcatcaaattatcatcttcatttcataacttaatttcaaattcaaaa |
45036624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 45042100 - 45042056
Alignment:
| Q |
346 |
tctatcatcaagtcttccttaccttactataaataagtctcaaat |
390 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
45042100 |
tctatcatcaactcttccttaccttactataaataagcctcaaat |
45042056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 35549280 - 35549238
Alignment:
| Q |
134 |
caaaatataaacaaaaacgaatcaaagaaaattaatgtatttg |
176 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
35549280 |
caaaatataaacaaaaacgagtcaaacaaaattgatgtatttg |
35549238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University