View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18700_low_8 (Length: 425)
Name: NF18700_low_8
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 276
Target Start/End: Complemental strand, 32753199 - 32752950
Alignment:
| Q |
26 |
tgccttgtgttaatggagctcagctttcaaattatgctactagaccc--acaaatggcaccattatgcttttcatttgtcatcttttatttatagctggt |
123 |
Q |
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| T |
32753199 |
tgccttgtgttaatggagctcagctttcaaattatgctactaaacccccacaaatggcaccattatgcttttcatttgtcatcttttatttatagctggt |
32753100 |
T |
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| Q |
124 |
tatatgctgctaagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttcctttgnnnnnnncaatgtggaaaacaaacaaa |
223 |
Q |
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| T |
32753099 |
tatatgct---aagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttccattgtttttatcaatgaggaaaacaaacaaa |
32753003 |
T |
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| Q |
224 |
ataacaataattggtcaacaatggaatctataatcccagttaatgcaccgtag |
276 |
Q |
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| T |
32753002 |
ataacaataattggtcaacaatggaatctataatcccagttaatgcaccgtag |
32752950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 286 - 414
Target Start/End: Complemental strand, 32752892 - 32752764
Alignment:
| Q |
286 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgtttgatcacatccaatttatgtgccatgttcgacca |
385 |
Q |
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| T |
32752892 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgtttgatcacatccaatttatgtgccatgttcgacca |
32752793 |
T |
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| Q |
386 |
atgtttcttctaaattcaccaatattcat |
414 |
Q |
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| T |
32752792 |
atgtttcttctaaattcaccaatattcat |
32752764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 3284504 - 3284620
Alignment:
| Q |
286 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctttcactcttttatgtttgatcacatccaatttatgtgccatgttcgacca |
385 |
Q |
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||||||| | |||||||||||||| ||||||| ||||||||||| | ||||||||||||| ||||| || || |||||| ||||| ||||| ||||||| |
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| T |
3284504 |
tcaatttcatgcagagtgaatcagttgcataacgttagttgctcgcatctttcactctttcatgttcgaagacctccaatctatgtaccatgctcgacca |
3284603 |
T |
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| Q |
386 |
atgtttcttctaaattc |
402 |
Q |
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| T |
3284604 |
acctttcttctatattc |
3284620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 3282423 - 3282504
Alignment:
| Q |
112 |
tttatagctggttatatgctgctaagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttcctttg |
196 |
Q |
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| T |
3282423 |
tttatagctggctatatgct---aagtggatctgtcttccgcgattctcctgatgtaaagccactacaacgaacaatttcctttg |
3282504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 3281928 - 3281965
Alignment:
| Q |
29 |
cttgtgttaatggagctcagctttcaaattatgctact |
66 |
Q |
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| T |
3281928 |
cttgtgttagtggagctcagctctcaaattatgctact |
3281965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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