View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18700_low_9 (Length: 415)
Name: NF18700_low_9
Description: NF18700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18700_low_9 |
 | |
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| [»] scaffold0927 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 28585213 - 28584830
Alignment:
| Q |
18 |
acagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28585213 |
acagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacattaccaataattttgctgaaatggtctacaaaaagcatggattcaacc |
28585114 |
T |
|
| Q |
118 |
ctatagacacacttaaaaaatcggtacactaactagccnnnnnnnnnnnnnn--ccatcatatatataaattatgttttcaaatggctgagtatatataa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28585113 |
ctatagacacacttaaaaaatcggtacactaactagcctttttttttcttttttccatcatatatataaattatgttttcaaatggctgagtatatataa |
28585014 |
T |
|
| Q |
216 |
aattatttgcgtgaaacagtgggtactcttattgaacgctttcatggaggaggctcattggttgaattctggtcacctgccaagggcagaggattacttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
28585013 |
aattatttgcgtgaaacagtgggtactcttattgaacgctttcatggaggaggctcattggttgaattctagtcacctgccaagggcagaggattacttg |
28584914 |
T |
|
| Q |
316 |
aataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28584913 |
aataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
28584830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 28573981 - 28573601
Alignment:
| Q |
15 |
ggtacagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
28573981 |
ggtacagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacattaccaatagttttgctgaaatggtctacaaaaagcatggattta |
28573882 |
T |
|
| Q |
115 |
accctatagacacacttaaaaaatcggtacactaactagccnnnnnnnnnnnnnnccatcatatatataaattatgttttcaaatggctgagtatatata |
214 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||| | ||||||||||||||||||| |||||||| ||||||||||| | |
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|
| T |
28573881 |
accctatagacactctcaaaaaatcggtacactagctatctgtcttctttattt--catcatatatataaattattttttcaaacaactgagtatataaa |
28573784 |
T |
|
| Q |
215 |
aaattatttgcgtgaaacagtgggtactcttattgaacgctttcatggaggaggctcattggttgaattctggtcacctgccaagggcagaggattactt |
314 |
Q |
| |
|
|| |||||| | |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||||||||||||| |
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|
| T |
28573783 |
aa--tatttgtgcgaaacagtggatactcttattgaacgctttcatggaagaggcccattggttgaattctggacacttgccaagagcagaggattactt |
28573686 |
T |
|
| Q |
315 |
gaataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28573685 |
gaataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
28573601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 26315125 - 26314743
Alignment:
| Q |
18 |
acagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| || || | |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
26315125 |
acagagcaacttccaaacttcatgaaaatatctttgaatgcactttacgaaattactagtaattttgctgatatggtctacaaaaagcatggattcaacc |
26315026 |
T |
|
| Q |
118 |
ctatagacacacttaaaaaatcggtacactaactagccnnnnnnnnnnnnnnccatcatatata--taaattatgttttcaaatggctgagtatatataa |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
26315025 |
ctatagacactcttaaaaaatcggtacactaactagccgtcttttttattt--catcatatatacataaattattctttcaaatggctgagtatatgtaa |
26314928 |
T |
|
| Q |
216 |
aatt-atttgcgtgaaacagtgggtactcttattgaacgctttcatggaggaggctcattggttgaattctggtcacctgccaagggcagaggattactt |
314 |
Q |
| |
|
|| | ||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| | || ||||||||||||||||| |
|
|
| T |
26314927 |
aaatgatttgggtgaaacagtggatacgcttattgaacgctttcatggaagaggctcattggttgaattctggccacttaccgagggcagaggattactt |
26314828 |
T |
|
| Q |
315 |
gaataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
399 |
Q |
| |
|
||| |||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26314827 |
gaacaatggaattgtgagcaccggagtgcatgttgtgcttgtacatgcattcttcctgttggatcatgttcatggtataacaaag |
26314743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 28567233 - 28566855
Alignment:
| Q |
18 |
acagagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
28567233 |
acagagcaacttccaaacttcatgaaaatatctttgaatgcactttacgacattaccaataaatttgctgaaaatgtctacaagaagcatggatttaacc |
28567134 |
T |
|
| Q |
118 |
ctatagacacacttaaaaaatcggtacactaactagccnnnnnnnnnnnnnnccatcatatatataaattatgtttt-caaatggctgagtatatataaa |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||||| |||||| || |
|
|
| T |
28567133 |
ctatagacacactcaaaaaatcggtacacttactatccgtcttttttattt--catcatatatataaattatttttttcaaacggctgattatataataa |
28567036 |
T |
|
| Q |
217 |
attatttgcgtgaaacagtgggtactcttattgaacgctttcatggaggaggctcattggttgaattctggtcacctgccaagggcagaggattacttga |
316 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||| | |
|
|
| T |
28567035 |
--tatttgcgtgaaacagtggatacgcttattgaacgctttcatggaagaggctcattggttgaattctggtcacttaccaaaagcagaggattacttaa |
28566938 |
T |
|
| Q |
317 |
ataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
399 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
28566937 |
acaatggaatagtgagcactggagtgcatgttgtgcttgaacatgcattcttccttttggatcatgttagtggtataacaaag |
28566855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 227 - 399
Target Start/End: Complemental strand, 20616108 - 20615936
Alignment:
| Q |
227 |
tgaaacagtgggtactcttattgaacgctttcatggaggaggctcattggttgaattctggtcacctgccaagggcagaggattacttgaataatggaat |
326 |
Q |
| |
|
||||||||||||| | |||||| || |||||| || | |||||||||||||||||||||||| | |||| ||||||| |||||||| |||||||| |
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|
| T |
20616108 |
tgaaacagtgggtgcgcttattaaatgctttcttgaaagaggctcattggttgaattctggtattttaccaacaacagaggaatacttgaacaatggaat |
20616009 |
T |
|
| Q |
327 |
cgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
399 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| |||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
20616008 |
tgtgagcacaggagttcatgttgtacttatccatgctttcttcctcatggatcatgctaagggtataacaaag |
20615936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 20616319 - 20616242
Alignment:
| Q |
72 |
accaataattttgctgaaatggtctacaaaaagcatggattcaaccctatagacacacttaaaaaatcggtacactaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
20616319 |
accaataattttgctgaaatggtctacaaaaagcatggattcaaccctatagatacacttaaaatatcggtaaactaa |
20616242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 24070661 - 24070285
Alignment:
| Q |
21 |
gagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacccta |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24070661 |
gagcaacttccaaacttcatgaaaatatctttgaatgcactttacgacattaccaataattttgctgaaaaggtctacaagaagcatggattcaacccta |
24070562 |
T |
|
| Q |
121 |
tagacacacttaaaaaatcggtacactaactagccnnnnnnnnnnnnnnccatcatatatataaattatgttttcaaatggctgagtatatataaaatta |
220 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| || ||||||||||||||||| |||||||||| |||||| ||||||||| || |
|
|
| T |
24070561 |
tagacactcttaaaaaatcggtatactaactaaccgtcttttatatttt--atcatatatataaattaatttttcaaatgactgagtctatataaaacta |
24070464 |
T |
|
| Q |
221 |
tttgcgtgaaacagtgggtactcttattgaacgctttcatggaggaggctcattggttgaattctggtcacctgccaagggcagaggattacttgaataa |
320 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||| || |
|
|
| T |
24070463 |
tttgggtgaaacagtggatacgcttattgaacgctttcatggaagaggctcgttggttgaattctagtcatttgccaagggcagaggattacttgaacaa |
24070364 |
T |
|
| Q |
321 |
tggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
399 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24070363 |
tggaattgtgagcaccggagtccatgttgtgcttgtacatgcattcttcttgttggatcatgttaatggtataacaaag |
24070285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 399
Target Start/End: Original strand, 24080075 - 24080451
Alignment:
| Q |
21 |
gagcaacttccaaacttcatgaaaatagctttgaatgcactttacgacatcaccaataattttgctgaaatggtctacaaaaagcatggattcaacccta |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24080075 |
gagcaacttccaaacttcatgaaaatatctttgaatgcactttacgacattaccaataattttgctgaaaaggtctacaagaagcatggattcaacccta |
24080174 |
T |
|
| Q |
121 |
tagacacacttaaaaaatcggtacactaactagccnnnnnnnnnnnnnnccatcatatatataaattatgttttcaaatggctgagtatatataaaatta |
220 |
Q |
| |
|
||||||| |||||||||| |||| |||||||| || |||||||||||||||||| |||||||||| |||||| ||||||||| || |
|
|
| T |
24080175 |
tagacactcttaaaaaatgggtatactaactaaccgtcttttatatttt--atcatatatataaattattttttcaaatgactgagtctatataaaacta |
24080272 |
T |
|
| Q |
221 |
tttgcgtgaaacagtgggtactcttattgaacgctttcatggaggaggctcattggttgaattctggtcacctgccaagggcagaggattacttgaataa |
320 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||| || |
|
|
| T |
24080273 |
tttgggtgaaacagtggatacgcttattgaacgctttcatggaagaggctcgttggttgaattctagtcatttgccaagggcagaggattacttgaacaa |
24080372 |
T |
|
| Q |
321 |
tggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
399 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24080373 |
tggaattgtgagcaccggagtccatgttgtgcttgtacatgcattcttcttgttggatcatgttaatggtataacaaag |
24080451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 399
Target Start/End: Original strand, 1 - 95
Alignment:
| Q |
305 |
aggattacttgaataatggaatcgtgagcactggagttcatgttgtgcttatacatgcattcttcctgttggatcatgttaatggtataacaaag |
399 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
aggattacttgaacaacggaatagtgagcactggagtgcatgttgtgcttgaacatgcattcttcctgttggatcatgttaatggtataacaaag |
95 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 2602442 - 2602513
Alignment:
| Q |
72 |
accaataattttgctgaaatggtctacaaaaagcatggattcaaccctatagacacacttaaaaaatcggta |
143 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
2602442 |
accaatgatttcgctgaaaaggtctacaaaaagcatggattgaaccctatcaaaacacttaaaaaatcggta |
2602513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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