View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18701_high_2 (Length: 701)
Name: NF18701_high_2
Description: NF18701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18701_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 17 - 682
Target Start/End: Complemental strand, 2372823 - 2372166
Alignment:
| Q |
17 |
gaaatgaattgaaaagtgctttcttaatgaaaattttgaatcacaatgagactaaaatcaaatccagaaacaagaaattgaaaacatgaggacgaatgaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372823 |
gaaatgaattgaaaagtgctttcttaatgaaaattttgaattacaatgagactaaaatcaaatccagaaacaagaaattgaaaacatgaggacgaatgaa |
2372724 |
T |
|
| Q |
117 |
ttaaatggaatcaacatgaaacataacaaaaatagattggagaccagaaatcgtgaatttagcacaaaatgtaaaatcacaagccataattaaaacaaac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372723 |
ttaaatggaatcaacatgaaacataacaaaaatagattggagaccagaaatggagaatttagcacaaaatgtaaaatcacaagccataattaaaacaaac |
2372624 |
T |
|
| Q |
217 |
cagaaacaaaggaatggatccagaacataccagaacaacgaagatgctatcacaaaacaaaattgtgtaaccagtcagtcacaaagctgctggttgaagg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
2372623 |
cagaaacaaaggaatggatccagaacataccagaacaacgaagatgctatcacaaaacaaaattgtgtaacca----gtcacaaagctgctgtttgaagg |
2372528 |
T |
|
| Q |
317 |
aagtctcagagc----attgaaaagatttgatagaaatcctgaaatgcgagagaacatgctatcagtatcaaacatcattnnnnnnnnnnnnnnnngaaa |
412 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2372527 |
aagtctcggagcattgattgaaaagatttgatagaaatcctgaaatgcgagagaacatgctatcagtatcaaacatcattaaaaaaaaa--------aaa |
2372436 |
T |
|
| Q |
413 |
gaaactcggcatccagtccacgggctaactaatcataggggttcaaccctatcgttcacttgtgaggcacaagagaccaagtcaacgctaaggtcttaag |
512 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2372435 |
aaaactcggcatccagtccacaggctaactaatcataggggttcaaccctatcgtccacttgtgaggcacaagagaccaagtcaacactaaggtcttaag |
2372336 |
T |
|
| Q |
513 |
tcaccactattacgcaaacatcaaattaaacataacaattgcaataattttcaattaaagagaaacaattttagaatgaagaaaaattacccagaaagag |
612 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2372335 |
tccccactattacgcaaacatcaaattaaacataacaattgcaataattttcaattaaagagaaactattttagaatgaagaaaaattacccagaaagag |
2372236 |
T |
|
| Q |
613 |
agaggaataaatcactataaaaaagaacaaagatttagtaatttaccggtccaaatcttaaagcagtgac |
682 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2372235 |
aggggattaaatcactataaaaaagaacaaagatttagtaatttaccggtccaaatcttaaagcagtgac |
2372166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 2367414 - 2367216
Alignment:
| Q |
22 |
gaattgaaaagtgctttcttaatgaaaattttgaatcacaatgagactaaaatcaaatccagaaacaagaaattgaaaacatgaggacgaatgaattaaa |
121 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||| || ||||||||||| ||||||| |||||| || ||||||| |
|
|
| T |
2367414 |
gaattgaaaagtcctttcctaatgaaaattttgaatcacaaggaaactaaaatcaaattcaaaaacaagaaatagaaaacacgaggactaactaattaaa |
2367315 |
T |
|
| Q |
122 |
tggaatcaacatgaaacataacaaaaatagattggagaccagaaatcgtgaatttagcacaaaatgtaaaatcacaagccataattaaaacaaaccagaa |
221 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||| |||||| |||||||| |||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
2367314 |
tggaatcaacatgaaacataacaagaacagactggagacctgaaatcacgaatttagtacaaaaggtaaaatcaca---cataatataaacaaaccagaa |
2367218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 12114010 - 12114137
Alignment:
| Q |
15 |
ctgaaatgaattgaaaagtgctttcttaatgaaa-attttgaatcacaatgagactaaaatcaaatccagaaacaagaaattgaaaacatgaggacgaat |
113 |
Q |
| |
|
|||||||| |||||||||||| |||| || ||| ||||||||||| | || || ||||||||||| ||||||||||||| ||||| |||||| || |
|
|
| T |
12114010 |
ctgaaatggattgaaaagtgccttctggataaaacattttgaatcaataggaaacaaaaatcaaatctggaaacaagaaattagaaacacgaggaccaaa |
12114109 |
T |
|
| Q |
114 |
gaattaaatggaatcaacatgaaacata |
141 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
12114110 |
gaactaaatggaatcaacatgaaacata |
12114137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 681
Target Start/End: Complemental strand, 2366798 - 2366619
Alignment:
| Q |
504 |
ggtcttaagtcaccactattacgcaaacatcaaattaaacataacaattg-----caataattttcaattaaagagaaacaattttagaatgaagaaaaa |
598 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||||| |||||||| |||| ||||| ||||||||| ||||| || || | ||||| |
|
|
| T |
2366798 |
ggtcctaagtcaacactattactcaaacatcaaattaaacacaacaattgcaagacaatcattttgaattaaagaataacaagaata-aagaacaaaaaa |
2366700 |
T |
|
| Q |
599 |
ttacccagaaagagagaggaataaatcactataaaaaagaacaaagatttagtaatttaccggtccaaatcttaaagcagtga |
681 |
Q |
| |
|
||||| ||||||||||||||| |||||| | ||||| |||||||||||||||| |||| || |||||||| ||||||||| |
|
|
| T |
2366699 |
atacccggaaagagagaggaat-aatcacca-gaaaaataacaaagatttagtaacctacccgtacaaatctttaagcagtga |
2366619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 372
Target Start/End: Original strand, 12114284 - 12114396
Alignment:
| Q |
256 |
gaagatgctatcacaaaacaaaattgtgtaaccagtcagtcacaaagctgctggttgaaggaagtctcagagcattgaaaagatttgatagaaatcctga |
355 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| | | | |||||| ||||| | || ||| ||| |||||||| | || |||||| |
|
|
| T |
12114284 |
gaagatgcgatcacaaaacaaaattgtgtaa----tcagtcacaaatcggtagtttgaagaaagtcaccgatcatcgaagagatttgacaaaactcctga |
12114379 |
T |
|
| Q |
356 |
aatgcgagagaacatgc |
372 |
Q |
| |
|
|||| ||||||| |||| |
|
|
| T |
12114380 |
aatgggagagaagatgc |
12114396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 632 - 690
Target Start/End: Complemental strand, 27070898 - 27070841
Alignment:
| Q |
632 |
aaaaagaacaaagatttagtaatttaccggtccaaatcttaaagcagtgactgatgatg |
690 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| |
|
|
| T |
27070898 |
aaaaagaacaaagatttagtaatttaccagtccaaatcttcaagcaatga-tgatgatg |
27070841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 38703187 - 38703056
Alignment:
| Q |
13 |
gactgaaatgaattgaaaagtgctttcttaatgaaa-attttgaatcacaatgagactaaaatcaaatccagaaacaagaaattgaaaacatgaggacga |
111 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| ||| ||||||| || || ||||| || ||||| ||||| | ||||| ||| ||| || ||| | |
|
|
| T |
38703187 |
gactgaaatggattgaaaagtggcttcttaatgaaacattctgaatcataaggaaactaacataaaatcaagaaaaatgaaatagaatacacgaagacca |
38703088 |
T |
|
| Q |
112 |
atgaattaaatggaatcaacatgaaacataac |
143 |
Q |
| |
|
| | ||||| ||||||||| |||||||||| |
|
|
| T |
38703087 |
actatctaaatagaatcaacaagaaacataac |
38703056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University