View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18701_high_5 (Length: 324)
Name: NF18701_high_5
Description: NF18701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18701_high_5 |
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| [»] scaffold0339 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 47296657 - 47296965
Alignment:
| Q |
1 |
atgagatgatgctaaaatttattgcagtaatagatagtattgcattaaaactaaacttatacaatatctaggnnnnnnnntattcaattgaacaaaaaac |
100 |
Q |
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| T |
47296657 |
atgagatgatactaaaatttattgcagtaatagatagtattgcattaaaactaaacctatacaatatctaggaaaaaaa--attcaattgaacaaaaaac |
47296754 |
T |
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| Q |
101 |
agtatttgcactttatgagacctttttattggcaatttggaacatttggaggatgaggttgttgttggattctggaattgatccagtgattttttagatc |
200 |
Q |
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| T |
47296755 |
agtatttgcactttatgagacctttttattggcaatttggaacatttggaggatgaggttgttgttggattctggaattgatccagtgattttttagatc |
47296854 |
T |
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| Q |
201 |
ctcaagggtattctaatcataaaaaatttaccaaaatggtggcaaagtgtcttccaaattagtacaattgagaaaaaggatgcaaattttatgctatttt |
300 |
Q |
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| T |
47296855 |
ctcaagggtattctaatcataaaaaatttactataatggtggcaaagtgtcttccaaattagtacaattgagaaaaaggatgcaaattttatgctatttt |
47296954 |
T |
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| Q |
301 |
aattttttatt |
311 |
Q |
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| T |
47296955 |
aattttttatt |
47296965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47289901 - 47289971
Alignment:
| Q |
1 |
atgagatgatgctaaaatttattgcagtaatagatagtattgcattaaaactaaacttatacaatatctag |
71 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47289901 |
atgagatgatactaaaatttattgcagtaatagatagtattgcattaaaactaaacttatacaatatctag |
47289971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 14830 - 14707
Alignment:
| Q |
134 |
aatttggaacatttggaggatgaggttgttgttggattctggaat-tgatccagtgattttttagatcctcaagggtattctaatcataaaaaatttacc |
232 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| || | ||||||| | ||||||||||| ||||||||| || |||| ||||| ||| |
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| T |
14830 |
aatttggaacatttggaggataaggttgttgttggattctgttatctcatccagtcaatttttagatccgaaagggtattttagtcattggaaattgacc |
14731 |
T |
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| Q |
233 |
aaaatggtggcaaagtgtcttcca |
256 |
Q |
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| T |
14730 |
aaaatggtggcacagtttcttcca |
14707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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