View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18701_low_1 (Length: 716)

Name: NF18701_low_1
Description: NF18701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18701_low_1
NF18701_low_1
[»] chr1 (1 HSPs)
chr1 (18-701)||(7265998-7266681)


Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Complemental strand, 7266681 - 7265998
Alignment:
Q  18 ctttcaccaaagtcattcttcttgtagcagcttttctctcagttacactctcccatgctcatcctgtccatgatttccacttcggctggggtggtcatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7266681 ctttcaccaaagtcattcttcttgtagcagcttttctctcagttacactctcccatgctcatcctgtccatgatttccactttggctggggtggtcatca 7266582  T
Q  118 tggtggaaccactagaggaatgtcttttggactttctcctcaattctatcagttttcatgccctcaagctaatgacattgtcatgtcagtcttggagaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266581 tggtggaaccactagaggaatgtcttttggactttctcctcaattctatcagttttcatgccctcaagctaatgacattgtcatgtcagtcttggagaag 7266482  T
Q  218 gccattgctaaggatatcagaatagcagcttctcttcttcgacttcacttccacgactgcttcgtgcaggtaaatttcaaacacaatagcaatacatgtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266481 gccattgctaaggatatcagaatagcagcttctcttcttcgacttcacttccacgactgcttcgtgcaggtaaatttcaaacacaatagcaatacatgtt 7266382  T
Q  318 ctaaatactggtctgagtcgcgacataaaggtttttaagtctttgcatttgtaccggacacatttgatcgtacttcgatataatatcaagaattgtgacc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266381 ctaaatactggtctgagtcgcgacataaaggtttttaagtctttgcatttgcaccggacacatttgatcgtacttcgatataatatcaagaattgtgacc 7266282  T
Q  418 gcaagtaaaatataaaataatatcataatcatgtatctaagtcttcctgaatacactttcttaatttgccaacaacttttgatagnnnnnnntagattca 517  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  7266281 gcaagtaaaacataaaataatatcataatcatgtatctaagtcttcctgaatacactttcttaatttgccaacaacttttgatagaaaaaaatagattca 7266182  T
Q  518 tttcataaggaattaattcttattcttagtatataaaatcatgtatctttttgttgagctattttgtagtatatattgctttgcatttgttaaatttgct 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7266181 tttcataaggaattaattcttattcttagtatataaaatcatgtatctttttgttgagctattttgtagtatatattgctttccatttgttaaatttgct 7266082  T
Q  618 ttggattcttttgcatgcatatgtcaaggagctgaaaaatttctcttcattatacttttaacgacagggctgcgatgcatcaat 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7266081 ttggattcttttgcatgcatatgtcaaggagctgaaaaatttctcttcattgtacttttaacgacagggctgcgatgcatcaat 7265998  T

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