View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18701_low_3 (Length: 466)
Name: NF18701_low_3
Description: NF18701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18701_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 6505569 - 6505127
Alignment:
| Q |
14 |
ttctagaagttttctcaaatccaacgttcacaaaggtttcagataaacgttggaaggaggtgatattgaaccaaaacattataatatgttttgaactgtc |
113 |
Q |
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| T |
6505569 |
ttctagaagttttgtcaaatccaacgttcacaaaggtttcagataaacattagaaggaggtgatattgaaccaaaatattataatatgttttgaactgtc |
6505470 |
T |
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| Q |
114 |
tgatgacatattattatattatttaaagggatgagaatgcgccaatggctccttgtat------tcaacgatcaacaaccaacagtttaagcaacaactt |
207 |
Q |
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| T |
6505469 |
tgaagacatattattatattatttaaagggatgagaatgcgccaatggctcctcgtatgcatattcaacgatcaacaaccaacagtttaagcaacaactt |
6505370 |
T |
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| Q |
208 |
gctgcaaatatgtcctattatgcatattcaatgactaagaaaattgcttcctgttgtaaacgttt-aatttgtttacccaataatgcttaaatgatatga |
306 |
Q |
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| T |
6505369 |
gctgcaaatatgtcctattatgcatattcaatgactaagaaaattgcttcctatgataaacgttttaatttgtttacccaataatgcttagatgatatga |
6505270 |
T |
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| Q |
307 |
tatgaatttcttttatcttaactaaggtactggattcaaatcaaaccttgaacatgcaccaacattaaaactcttaggaattagtctctgcagttgcggg |
406 |
Q |
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| T |
6505269 |
tatgaatttcttttagtttaactaaggcactggattcaaatcaaaccttgaacatgcaccaacattaaaatttttaggaattagtctctgcagttgcggg |
6505170 |
T |
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| Q |
407 |
cacgaaggatacccaatttacactaaataacgttgtaatttgt |
449 |
Q |
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| T |
6505169 |
cacgaaggatacccaatttacattaaataacgttgttatttgt |
6505127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 22755700 - 22755770
Alignment:
| Q |
359 |
catgcaccaacattaaaactcttaggaattagtctctgcagttgcgggcacgaaggatacccaatttacac |
429 |
Q |
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| T |
22755700 |
catgcagcagcattaaaactcttaggtattagtctcttcagttgcgcgcgtggaggatacccggtttacac |
22755770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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