View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18701_low_4 (Length: 452)
Name: NF18701_low_4
Description: NF18701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18701_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 23 - 446
Target Start/End: Complemental strand, 14714631 - 14714208
Alignment:
| Q |
23 |
gcattcgaacacatgacatataattatgccatgcttggttttgcaccttacggtcccttttggcgcgaaatgaggaagatcgttacactaaattttctct |
122 |
Q |
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| T |
14714631 |
gcattcgaacacatgacatataattatgccatgcttggttttgcaccttacggtcccttttggcgcgaaatgaggaagatcgttacactaaattttctct |
14714532 |
T |
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| Q |
123 |
caaatcatcagatcaatctattaactcacattcgtgtctccgaggttcaaatttcgattaaagagctatataatttttggaaaaataggaaagatgaaaa |
222 |
Q |
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| T |
14714531 |
caaatcatcagatcaatctattaactcacatttgtgtctctgaggttcaaacttcgattaaagagctatataatttttggaaaaataggaaagatgaaaa |
14714432 |
T |
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| Q |
223 |
tggttatttgttggtggagatgaagaaatggtttaatgagttggcttttaatatagttcttagaatggttgctgggaaaagatactttggggagagtgtg |
322 |
Q |
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| T |
14714431 |
tggttatttgttggtggagatgaagaaatggttaaatgagttggcttttaatatagttcttagaatggttgctgggaaaagatactttggggagagtgtg |
14714332 |
T |
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| Q |
323 |
atggttaaagaggaagaagctaataggtgtttgaatgctttaagagattacatgcgtttgactggtgtgtttcctattgctgatgctgttccttttttga |
422 |
Q |
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| T |
14714331 |
atggttaaagaggaagaagctaataggtgtttgaatgctttaagagattacatgcgtttgactggtgtgtttcctattgctgatgctgttccttttttga |
14714232 |
T |
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| Q |
423 |
ggtggtttgatattcttggacatg |
446 |
Q |
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| T |
14714231 |
ggtggtttgattttggtggacatg |
14714208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 14755073 - 14754646
Alignment:
| Q |
19 |
cgttgcattcgaacacatgacatataattatgccatgcttggttttgcaccttacggtcccttttggcgcgaaatgaggaagatcgttacactaaatttt |
118 |
Q |
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|||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
14755073 |
cgttgcattcaagcacatgacatataatcatgccatgcttggttttgcaccctacggtcccttttggcgcgaaatgaggaagatcgttactctaagtttt |
14754974 |
T |
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| Q |
119 |
ctctcaaatcatcagatcaatctattaactcacattcgtgtctccgaggttcaaatttcgattaaagagctatataatttttggaaaaataggaaagatg |
218 |
Q |
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|||||||| |||| |||| ||||||||||||| | |||||||| || ||||||| |||||| |||||||||| || | |||||||||||| | ||| | |
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| T |
14754973 |
ctctcaaaccatcggatcgatctattaactcatgtccgtgtctcagaagttcaaacttcgatcaaagagctatttagtatttggaaaaataaaagagacg |
14754874 |
T |
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| Q |
219 |
aaaatggttatttgttggtggagatgaagaaatggtttaatgagttggcttttaatatagttcttagaatggttgctgggaaaagatactttggggagag |
318 |
Q |
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|||||||||||||| | |||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
14754873 |
aaaatggttatttgcttgtggagatgaagaagtggtttcatgagttggcttttaatactgctcttagaatggttgctgggaagagatattttggagagag |
14754774 |
T |
|
| Q |
319 |
tgtgatggttaaagaggaagaagctaataggtgtttgaatgctttaagagattacatgcgtttgactggtgtgtttcctattgctgatgctgttcctttt |
418 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||| |||| ||| |
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| T |
14754773 |
tgtgatggttaaagaggaagaagcaaatcggtgtttgaatgctttaagggattatatgcgtttgatcggtgtttttcctattgctgatgctattccgttt |
14754674 |
T |
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| Q |
419 |
ttgaggtggtttgatattcttggacatg |
446 |
Q |
| |
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||| ||||||||||| || |||||||| |
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| T |
14754673 |
ttgcggtggtttgattttggtggacatg |
14754646 |
T |
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