View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18701_low_6 (Length: 278)
Name: NF18701_low_6
Description: NF18701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18701_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 10034267 - 10034417
Alignment:
| Q |
65 |
aaattaaaatttatatacattattatttaaccaaatttcttgaagaaaaactcaaagttgcacaattcacataacctaagattgcaa--------acatg |
156 |
Q |
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| T |
10034267 |
aaattaaaatttatatacattattatttaaccaaatttcttgaagaaaaactcaaggttgcacaattcacataacctaagattgcaatcaattgcacatg |
10034366 |
T |
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| Q |
157 |
gaattaatgtacgtatgaaattcttgaaacataataacaaaataatgtatt |
207 |
Q |
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| T |
10034367 |
gaattaatgtacgtattaaattcttgaaacataataacaaaataatgtatt |
10034417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 10034234 - 10034267
Alignment:
| Q |
13 |
taggtacaataatatttcacctagaccatgaaaa |
46 |
Q |
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| T |
10034234 |
taggtacaataatatttcacctagaccatgaaaa |
10034267 |
T |
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