View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_high_13 (Length: 248)
Name: NF18702_high_13
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_high_13 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 11730012 - 11729771
Alignment:
| Q |
8 |
attattctagggcttgcaagtttcgagtttcaaagttgttatcaaatggctaatctctcattcttgctgtctttgcagctgatgctactactctccgaga |
107 |
Q |
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| T |
11730012 |
attattctagggcttgcaagtttcgagtttcaaagttgttatcaaatggctaatctctcattcttgctgtctttgcagatgatgctactactctccaaga |
11729913 |
T |
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| Q |
108 |
tttttgcgtcacaaacccaataggccaaggtataattaacaaacacacaa--gtannnnnnnaattaacaacaattcatctaattcacgttttgttctta |
205 |
Q |
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| T |
11729912 |
tttttgcgtcacaaacccaataggccaaggtataattaacaaacacacaaacgtatttttttaattaacaacaattcatctaattcacgttttgttctta |
11729813 |
T |
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| Q |
206 |
aatctaaaatttatatatttcttaaaagatgaatgttagcaac |
248 |
Q |
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| T |
11729812 |
aatctaaaatttatata-ttcttaaatgatgaaagttagcaac |
11729771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 11672577 - 11672504
Alignment:
| Q |
68 |
ttcttgctgtctttgcagctgatgctactactctccgagatttttgcgtcacaaacccaataggccaaggtata |
141 |
Q |
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| T |
11672577 |
ttctagctgtctttgcagctgatgctactactctccaagatttttgcgtgacaaatccaataggccaaggtata |
11672504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 11720852 - 11720784
Alignment:
| Q |
8 |
attattctagggcttgcaagtttcgagtttcaaagttgttatcaaatggctaatctctcattcttgctg |
76 |
Q |
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| T |
11720852 |
attaatctagggcttgcaagtttcgggtttcaaagttttattcaaatggctaatctctcattcttgctg |
11720784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 11720739 - 11720688
Alignment:
| Q |
90 |
tgctactactctccgagatttttgcgtcacaaacccaataggccaaggtata |
141 |
Q |
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| T |
11720739 |
tgctactactctccaagatttttgcgtgacaaatccaataggccaaggtata |
11720688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 11712264 - 11712310
Alignment:
| Q |
33 |
agtttcaaagttgttatcaaatggctaatctctcattcttgctgtct |
79 |
Q |
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| T |
11712264 |
agtttcaaagttcttatcaaatggctaatccctcattcttgctgtct |
11712310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 11672654 - 11672597
Alignment:
| Q |
19 |
gcttgcaagtttcgagtttcaaagttgttatcaaatggctaatctctcattcttgctg |
76 |
Q |
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| T |
11672654 |
gctttcaaatttcgagttttaaagttcttatcaaatggctaatctctcactcatgctg |
11672597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 11712334 - 11712371
Alignment:
| Q |
75 |
tgtctttgcagctgatgctactactctccgagattttt |
112 |
Q |
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| T |
11712334 |
tgtctttgcagctgatgccactactctccaagattttt |
11712371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 7662599 - 7662553
Alignment:
| Q |
28 |
tttcgagtttcaaagttgttatcaaatggctaatctctcattcttgc |
74 |
Q |
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| T |
7662599 |
tttcaagtttcaaagtttttatcaaatggctaatctctcatacttgc |
7662553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 7662524 - 7662478
Alignment:
| Q |
75 |
tgtctttgcagctgatgctactactctccgagatttttgcgtcacaa |
121 |
Q |
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| T |
7662524 |
tgtctttgcagctgatgctagtactctccaagattattgcgtgacaa |
7662478 |
T |
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