View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_high_16 (Length: 234)
Name: NF18702_high_16
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_high_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 5446157 - 5445942
Alignment:
| Q |
19 |
agaccctcctacaagaacaaactcatgaacttggcttttactaatttttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatcc |
118 |
Q |
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| T |
5446157 |
agaccctcctacaagaacaaactcatgaacttggcttttactaatttttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatcc |
5446058 |
T |
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| Q |
119 |
ttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaagctcaataactgtttgtgaagatgaagaaa |
218 |
Q |
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| T |
5446057 |
ttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaagctcaataactgtttgtgaagatgaagaaa |
5445958 |
T |
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| Q |
219 |
gtaacctctttgcttt |
234 |
Q |
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| T |
5445957 |
gtaacctctttgcttt |
5445942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 5433197 - 5433294
Alignment:
| Q |
54 |
ttttactaatttttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaaca |
151 |
Q |
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| T |
5433197 |
ttttacttatttttgcctcatcctaaaatttttccagtgtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaaca |
5433294 |
T |
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