View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_high_18 (Length: 225)
Name: NF18702_high_18
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 37957959 - 37957777
Alignment:
| Q |
19 |
cataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttcta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957959 |
cataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttcta |
37957860 |
T |
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| Q |
119 |
aatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattac |
201 |
Q |
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| T |
37957859 |
aatgtgaaacaagaaatcgaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattac |
37957777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 37929628 - 37929810
Alignment:
| Q |
19 |
cataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttcta |
118 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| || || |||||||||||||||||| ||||||| ||||| |
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| T |
37929628 |
cataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcatcaattctcaactcagttcagttccaaaagcatcattcta |
37929727 |
T |
|
| Q |
119 |
aatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattac |
201 |
Q |
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|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
37929728 |
aatgctcaacaagaaatagaaagagctggactacgccatgtacaaagaaaatacttatcacaacttctagaggaagacattac |
37929810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 44644770 - 44644620
Alignment:
| Q |
21 |
taggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaa |
120 |
Q |
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||||||| ||||| |||||||| | ||| |||||||||||||| |||||||| |||| ||| | ||||| || ||||||| | |||||| | ||||| |
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| T |
44644770 |
taggaatctggggtatgggaggaatagggaaaacaacaattgctagtgcaatatatcgcaaattggcaacccaattcagttttaacagcatcatcctaaa |
44644671 |
T |
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| Q |
121 |
tgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaata |
171 |
Q |
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||| ||||||||||||| ||| |||||| ||||| ||| ||| ||||| |
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| T |
44644670 |
tgttcaacaagaaatagagagatttggactgcaccatatacaaagcaaata |
44644620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 34727887 - 34727847
Alignment:
| Q |
23 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
63 |
Q |
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| T |
34727887 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34727847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 34731045 - 34731005
Alignment:
| Q |
23 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
63 |
Q |
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| T |
34731045 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34731005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 18928839 - 18928879
Alignment:
| Q |
23 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
63 |
Q |
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| T |
18928839 |
ggaatatggggtatgggagggatcggcaaaacaacaattgc |
18928879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 34735640 - 34735604
Alignment:
| Q |
27 |
tatggggcatgggagggacaggcaaaacaacaattgc |
63 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
34735640 |
tatggggcatgggagggatcggcaaaacaacaattgc |
34735604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 25721219 - 25721351
Alignment:
| Q |
19 |
cataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttcta |
118 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||||||| ||||||| ||||||| ||||| | | |||||||| |||| ||| || ||||| | ||| |
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| T |
25721219 |
cataggaatttggggtatgggaggaataggcaaaaccgaaattgcccgtgcaatatatcacaggtttgcaactcaattcaattctagcagcatgatacta |
25721318 |
T |
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| Q |
119 |
aatgtgaaacaagaaatagaaagagctggacta |
151 |
Q |
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||||| ||||||||||| |||||| ||||||| |
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| T |
25721319 |
aatgttgaacaagaaataaaaagagttggacta |
25721351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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