View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_high_19 (Length: 223)
Name: NF18702_high_19
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 41351962 - 41351775
Alignment:
| Q |
18 |
caaagggctaatgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgctcaaagcagatgcaacataattctgactcac |
117 |
Q |
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| T |
41351962 |
caaagggctaatgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgctcaaagcagatgcaacataattctgactcac |
41351863 |
T |
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| Q |
118 |
taacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaattttaaacttggccaaata |
205 |
Q |
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| T |
41351862 |
taacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaattttaaacttggccaaata |
41351775 |
T |
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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 23714941 - 23714846
Alignment:
| Q |
29 |
tgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgctcaaagcagatgcaacataattctgactcactaacctg |
124 |
Q |
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| T |
23714941 |
tgtgcattgtgcacacatctggtggccacagtcttggacctcaattgtacacacctgctcaaagcagatgcagcataattccgtctcgctaacctg |
23714846 |
T |
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