View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18702_high_2 (Length: 585)
Name: NF18702_high_2
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 11628756 - 11629326
Alignment:
| Q |
1 |
caaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaagatgattatcaaaaagttgttgcagagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
11628756 |
caaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaaaatgattatcaaaaagctgttgcagagaa |
11628855 |
T |
|
| Q |
101 |
ggaagtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcagcaggatcatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11628856 |
ggaagtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcagcaggatcatgct |
11628955 |
T |
|
| Q |
201 |
caccacacgtaaatctaacttagccaatatttccagcaaagaatccaaaggtaaggtatataacctgcaacccttgaaagaagatgaagcatgggatcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11628956 |
caccacacgtaaatctaacttagccaatatttccagcaaagaatccaaaggtaaggtatataacctacaacccttgaaagaagatgaagcatgggatcta |
11629055 |
T |
|
| Q |
301 |
ttttgcaaaaagactttccaaggtcaccgatgcccttcatatttaattaacatatgtagttatatcttaagaaaatgtgagggccttcctcttgcgattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629056 |
ttttgcaaaaagactttccaaggtcaccgatgcccttcatatttaattaacatatgtagttatatcttaagaaaatgtgagggccttcctcttgcgattg |
11629155 |
T |
|
| Q |
401 |
tagcaatgagtggtgtccttgctacaaaagacaaacacaggatagatgagtgggataggatttgccgtagtcttggagctgaaattcaaatcaacggaaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629156 |
tagcaatgagtggtgtccttgctacaaaagacaaacataggatagatgagtgggataggatttgccgtagtcttggagctgaaattcaaatcaacggaaa |
11629255 |
T |
|
| Q |
501 |
acttgataatctgaaaacagtacttagcctcagttttaatgatttgccttactacttaaagtattgtttct |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11629256 |
acttgataatctgaaaacagtacttagcctcagttttaatgatttgcctcactacttaaagtattgtttct |
11629326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 105 - 571
Target Start/End: Original strand, 11651165 - 11651631
Alignment:
| Q |
105 |
gtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcagcaggatcatgctcacc |
204 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
11651165 |
gtacctagttgtatttgatgatgtgtggcatatacatgaatgggaagctgtcaaatatgcacttccaaaaaacaattgtggtagcaggatcatgatcacg |
11651264 |
T |
|
| Q |
205 |
acacgtaaatctaacttagccaatatttccagcaaagaatccaaaggtaaggtatataacctgcaacccttgaaagaagatgaagcatgggatctatttt |
304 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11651265 |
acacgcaaatcggacatagcctctatttccagcatagaatccaaaggtaaggtgtataacctacaacccttgaaagaagatgaagcatgggatctatttt |
11651364 |
T |
|
| Q |
305 |
gcaaaaagactttccaaggtcaccgatgcccttcatatttaattaacatatgtagttatatcttaagaaaatgtgagggccttcctcttgcgattgtagc |
404 |
Q |
| |
|
| | ||||||||||||||||||| ||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
11651365 |
gtagaaagactttccaaggtcactcatgtccttcatacttaattgacatttgtagttatatcttaagaaaatgtgagggcctaccccttgcaattgtagc |
11651464 |
T |
|
| Q |
405 |
aatgagtggtgtccttgctacaaaagacaaacacaggatagatgagtgggataggatttgccgtagtcttggagctgaaattcaaatcaacggaaaactt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| || ||||| | ||||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
11651465 |
aatgagtggtgtccttgctacaaaagacaagcacaggatagacgaatgggacatgatttgccgtagtcttggagctgaaattcaagtcaatgggaaactt |
11651564 |
T |
|
| Q |
505 |
gataatctgaaaacagtacttagcctcagttttaatgatttgccttactacttaaagtattgtttct |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11651565 |
gataatctgaaaacagtacttagcctcagttttaatgatttgccttactatttaaagtactgtttct |
11651631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 11650863 - 11650969
Alignment:
| Q |
2 |
aaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaagatgattatcaaaaagttgttgcagagaag |
101 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| ||||| |||||| |||||| || |||||||||||||||||||| ||| || | ||||||||||| |
|
|
| T |
11650863 |
aaaaacttttttctgaaataagacgaaaagttccagaaggcttggaaaacatgcacagtgacaagttgaagatgattattaaagagctcttgcagagaag |
11650962 |
T |
|
| Q |
102 |
gaagtac |
108 |
Q |
| |
|
|| |||| |
|
|
| T |
11650963 |
gaggtac |
11650969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University