View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18702_low_1 (Length: 641)

Name: NF18702_low_1
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18702_low_1
NF18702_low_1
[»] chr5 (4 HSPs)
chr5 (17-625)||(16193878-16194486)
chr5 (17-111)||(39946539-39946633)
chr5 (81-138)||(39945857-39945914)
chr5 (81-151)||(16195107-16195177)
[»] chr1 (1 HSPs)
chr1 (14-138)||(6942203-6942327)
[»] chr2 (2 HSPs)
chr2 (107-151)||(44986812-44986856)
chr2 (102-151)||(20606920-20606969)
[»] chr8 (1 HSPs)
chr8 (102-151)||(26847720-26847769)
[»] chr4 (4 HSPs)
chr4 (102-151)||(14527575-14527624)
chr4 (104-152)||(24666128-24666176)
chr4 (99-151)||(34450815-34450867)
chr4 (102-158)||(45393974-45394030)
[»] chr7 (1 HSPs)
chr7 (99-151)||(34808985-34809037)
[»] chr3 (1 HSPs)
chr3 (107-151)||(47571943-47571987)


Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 625
Target Start/End: Complemental strand, 16194486 - 16193878
Alignment:
Q  17 agagaagaaaggacatggagcaaagatccagtgtggtaataagtaatgaaatcctatagacatatttaatctgacggtggaataaagtggttcaccgatg 116  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  16194486 agagaaaagaggacatggagcaaagatccagtgtggtaataagtaatgaaattctagagacatatttaatctgacggtggaataaagtggttcactgatg 16194387  T
Q  117 aggaacttaattgatccttcactctagaattcaccaaataaaaaa--gaccatatcacccnnnnnnnnnnnnnnngtagagagttatgttatgaaataag 214  Q
    | | ||||||||||||| |||||||| ||| || |||||||||||  |||||||||||||               ||||||| |||||||||||||||||    
T  16194386 atggacttaattgatccctcactctataatccatcaaataaaaaaaagaccatatcacccgaaaaaacaaaa---gtagagaattatgttatgaaataag 16194290  T
Q  215 ctactaacaacggattgacgggcattaacgtaataacgtgtttgtttatcagtttttctactgtgtttagttctatataaagacccaattttagggttgt 314  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16194289 ctagtaacaacggattgacgggcattaacgtaataacgtgtttgtttatcagtttttctgctgtgtttagttctatataaagacccaattttagggttgt 16194190  T
Q  315 tttaaacatttcaggactcttgtgttgtagcccagcttgctttgtaatagaaa-gagtgnnnnnnnnnnnnnnnnnnnntgtgtataatatatttatgct 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||                    |||||||||||||||||||||    
T  16194189 tttaaacatttcaggactcttgtgttgtagcccagcttgctttgtaattgaaaagagtgaaaaaaatgaaaaagaaaaatgtgtataatatatttatgct 16194090  T
Q  414 aggcagaacccacttaaataccaaatttagctaatggatcaaaatgaaaaatggccaccatgcctcttagaaaggaggaaacaatgatggatgggaacaa 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  16194089 aggcagaacccacttaaataccaaatttagctaatggatcaaaatgcaaaatagccaccatgtctcttagaaaggaggaaacaatgatggatgggaacaa 16193990  T
Q  514 acgatattaaacatggaaaaaagaggagatgggtttagctccactttccatgtgctagattctattgtctaactaaatacatttggcatccatacatgga 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16193989 acgatattaaacatggaaaaaagaggagatgggtttagctccactttccatgtgctagattctattgtctaactaaatacatttggcatccatacatgga 16193890  T
Q  614 aaataaagatag 625  Q
    ||||||||||||    
T  16193889 aaataaagatag 16193878  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 39946539 - 39946633
Alignment:
Q  17 agagaagaaaggacatggagcaaagatccagtgtggtaataagtaatgaaatcctatagacatatttaatctgacggtggaataaagtggttcac 111  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||| ||| |||||||||||    
T  39946539 agagaagacatgacatggagcaaagatccagtgtggtaataagtaatgaaatcttgtagacgtatttaatctaacggtgaaattaagtggttcac 39946633  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 39945914 - 39945857
Alignment:
Q  81 tttaatctgacggtggaataaagtggttcaccgatgaggaacttaattgatccttcac 138  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||    
T  39945914 tttaatctgacggtggaataaagtggtacaccgatgagggacttaattggtccctcac 39945857  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 16195107 - 16195177
Alignment:
Q  81 tttaatctgacggtggaataaagtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 151  Q
    ||||||||||||||||||||| ||||| ||||  ||| | ||||||||||||| |||| ||||||| ||||    
T  16195107 tttaatctgacggtggaataatgtggtacaccagtgatggacttaattgatccctcaccctagaatccacc 16195177  T

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Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 6942327 - 6942203
Alignment:
Q  14 cacagagaagaaaggacatggagcaaagatccagtgtggtaataagtaatgaaatcctatagacatatttaatctgacggtggaataaagtggttcaccg 113  Q
    ||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  6942327 cacagagaatagaggacatggagcaaagattcagtgtggtaataagtattgaaatcttgtagacatatttaatctaacggtggaataaagtggttcaccg 6942228  T
Q  114 atgaggaacttaattgatccttcac 138  Q
    |||| | ||||||||||||| ||||    
T  6942227 atgaaggacttaattgatccctcac 6942203  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 44986856 - 44986812
Alignment:
Q  107 ttcaccgatgaggaacttaattgatccttcactctagaattcacc 151  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||    
T  44986856 ttcaccgatgagggacttaattgatccctcaccctagaattcacc 44986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 20606920 - 20606969
Alignment:
Q  102 agtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 151  Q
    |||||||||||| ||||| |||||||||| || |||| ||||||||||||    
T  20606920 agtggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 26847720 - 26847769
Alignment:
Q  102 agtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 151  Q
    |||||||||||| ||||||||||||||||||| |||  ||||||| ||||    
T  26847720 agtggttcaccggtgaggaacttaattgatccctcatcctagaatccacc 26847769  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 14527575 - 14527624
Alignment:
Q  102 agtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 151  Q
    |||||||||||| ||||| ||||||||||||| |||| ||||||| ||||    
T  14527575 agtggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 24666176 - 24666128
Alignment:
Q  104 tggttcaccgatgaggaacttaattgatccttcactctagaattcacca 152  Q
    |||||||||| ||||| ||||||||||||| |||| ||||||| |||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccacca 24666128  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 34450867 - 34450815
Alignment:
Q  99 taaagtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 151  Q
    ||||||| | ||||| ||||| ||||||||||||| |||| ||||||||||||    
T  34450867 taaagtgctccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 45394030 - 45393974
Alignment:
Q  102 agtggttcaccgatgaggaacttaattgatccttcactctagaattcaccaaataaa 158  Q
    |||||||||||| | ||  |||||||||| || |||||||||||||||||| |||||    
T  45394030 agtggttcaccggtaagagacttaattgaaccctcactctagaattcaccatataaa 45393974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 34808985 - 34809037
Alignment:
Q  99 taaagtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 151  Q
    ||||||||| ||||||||| | |||||||||| || |||||||||||| ||||    
T  34808985 taaagtggtacaccgatgaaggacttaattgaaccctcactctagaatccacc 34809037  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 47571943 - 47571987
Alignment:
Q  107 ttcaccgatgaggaacttaattgatccttcactctagaattcacc 151  Q
    ||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  47571943 ttcaccggtgagggacttaattgatccctcaccctagaattcacc 47571987  T

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