View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18702_low_10 (Length: 330)

Name: NF18702_low_10
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18702_low_10
NF18702_low_10
[»] chr1 (7 HSPs)
chr1 (10-314)||(49547080-49547384)
chr1 (246-314)||(47872614-47872682)
chr1 (254-300)||(33857282-33857328)
chr1 (254-300)||(33923595-33923641)
chr1 (239-300)||(44261669-44261730)
chr1 (33-77)||(32123584-32123628)
chr1 (21-62)||(34141638-34141679)
[»] chr3 (6 HSPs)
chr3 (33-76)||(21777206-21777249)
chr3 (39-77)||(42668172-42668210)
chr3 (28-73)||(35586173-35586218)
chr3 (194-309)||(14961756-14961874)
chr3 (26-77)||(42157733-42157784)
chr3 (196-283)||(574404-574492)
[»] chr5 (4 HSPs)
chr5 (26-76)||(1175862-1175912)
chr5 (26-76)||(12150688-12150738)
chr5 (10-79)||(13839473-13839540)
chr5 (27-73)||(33740020-33740066)
[»] chr8 (2 HSPs)
chr8 (21-72)||(32874844-32874894)
chr8 (33-76)||(39418173-39418216)
[»] chr7 (2 HSPs)
chr7 (34-77)||(13858445-13858488)
chr7 (26-75)||(7181389-7181438)
[»] chr4 (4 HSPs)
chr4 (239-282)||(55771061-55771104)
chr4 (239-282)||(55835295-55835338)
chr4 (21-75)||(56439290-56439344)
chr4 (26-77)||(34713068-34713117)
[»] chr2 (2 HSPs)
chr2 (21-75)||(5193176-5193229)
chr2 (21-71)||(38216438-38216488)
[»] chr6 (1 HSPs)
chr6 (21-73)||(6695406-6695458)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 49547080 - 49547384
Alignment:
Q  10 ataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactatnnnnnnnntgtgcaagatttctccaatttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| |||||||||||||||||    
T  49547080 ataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactataaaaaaaatgtggaagatttctccaatttc 49547179  T
Q  110 ccccctactcttcctcccctcgaaactctcagagtcttagttgctgttttttcaatcgtgaagttttcaaaatattttctggccgtaagacagtttttac 209  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547180 ccctctactctccctcccctcgaaactctcagagtcttagttgctgttttttcaatcgtgaagttttcaaaatattttctggccgtaagacagtttttac 49547279  T
Q  210 cagtggaaattagtttccgaagtagatataatgcatgaacctctaacccctattttaatactccaaagatatagactacattagttcattacgtgaaaaa 309  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49547280 ccgtggaaattagttcccgaagtagatataatgcatgaacctctaacccctattttaatactccaaagatataaactacattagttcattacgtgaaaaa 49547379  T
Q  310 attct 314  Q
    |||||    
T  49547380 attct 49547384  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 47872682 - 47872614
Alignment:
Q  246 gaacctctaacccctattttaatactccaaagatatagactacattagttcattacgtgaaaaaattct 314  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||| ||||    
T  47872682 gaacccctaacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttct 47872614  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 33857328 - 33857282
Alignment:
Q  254 aacccctattttaatactccaaagatatagactacattagttcatta 300  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  33857328 aacccctattttaatactccaaagatatagacttcatcagttcatta 33857282  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 33923595 - 33923641
Alignment:
Q  254 aacccctattttaatactccaaagatatagactacattagttcatta 300  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  33923595 aacccctattttaatactccaaagatatagacttcatcagttcatta 33923641  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 44261669 - 44261730
Alignment:
Q  239 aatgcatgaacctctaacccctattttaatactccaaagatatagactacattagttcatta 300  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| ||| |||||    
T  44261669 aatgcatgaacccctaacccctattttaatcctccaaagataaagactccatcagtccatta 44261730  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 32123584 - 32123628
Alignment:
Q  33 tatattaatgataaacattcatttatcattatctacaaaaacact 77  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  32123584 tatattaatgataaacattcatttatcattctttacaaaaacact 32123628  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 34141638 - 34141679
Alignment:
Q  21 aaaatttaaaagtatattaatgataaacattcatttatcatt 62  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||    
T  34141638 aaaatttaaaaatatattaatcataaacattaatttatcatt 34141679  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 21777249 - 21777206
Alignment:
Q  33 tatattaatgataaacattcatttatcattatctacaaaaacac 76  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  21777249 tatattaatgataaacattcatttatcattctctacaaaaacac 21777206  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 42668172 - 42668210
Alignment:
Q  39 aatgataaacattcatttatcattatctacaaaaacact 77  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668172 aatgataaacattcatttatcattatctacaaaaacact 42668210  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 35586218 - 35586173
Alignment:
Q  28 aaaagtatattaatgataaacattcatttatcattatctacaaaaa 73  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  35586218 aaaaatatattaatgataaactttcatttatcattctctacaaaaa 35586173  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 14961874 - 14961756
Alignment:
Q  194 gtaagacagtttttaccagtggaaattagtttccgaagtagatataatg---catgaacctctaacccctattttaatactccaaagatatagactacat 290  Q
    ||||||||||| ||| ||||||| |||||||||| ||| | ||| ||||   |||||||| || |||| ||||||||| ||||||| || |||| | |||    
T  14961874 gtaagacagttgttatcagtggacattagtttcccaaggacataaaatgcatcatgaacccctgacccatattttaatgctccaaatatgtagattccat 14961775  T
Q  291 tagttcattacgtgaaaaa 309  Q
     |||| ||||| |||||||    
T  14961774 cagtttattacatgaaaaa 14961756  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 42157784 - 42157733
Alignment:
Q  26 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 77  Q
    |||||| ||||| |||||||||||||||||||||||| ||| ||||| ||||    
T  42157784 ttaaaaatatatgaatgataaacattcatttatcattctctgcaaaagcact 42157733  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 574404 - 574492
Alignment:
Q  196 aagacagtttttaccagtggaaattagtttccgaagtagatataatgcatgaacctctaaccccta-ttttaatactccaaagatatag 283  Q
    |||||||||||||| |||| | |||||||||| | | | ||| |||||||| ||  | |||||||| ||||||| ||||||||||||||    
T  574404 aagacagtttttacaagtgaacattagtttcctatggacataaaatgcatgcactccaaacccctacttttaattctccaaagatatag 574492  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 1175912 - 1175862
Alignment:
Q  26 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 76  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  1175912 ttaaaaatatattaatcataaacattcatttatcattctctacaaaaacac 1175862  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 12150688 - 12150738
Alignment:
Q  26 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 76  Q
    |||||| ||||||||| ||||  ||||||||||||||||||||||||||||    
T  12150688 ttaaaaatatattaatcataagtattcatttatcattatctacaaaaacac 12150738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 13839540 - 13839473
Alignment:
Q  10 ataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactat 79  Q
    ||||||||  ||||| ||||||  |||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  13839540 ataatactctcaaaaattaaaa--atattaatcataaatattcatttatcattctctacaaaaccactat 13839473  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 33740066 - 33740020
Alignment:
Q  27 taaaagtatattaatgataaacattcatttatcattatctacaaaaa 73  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| |||||    
T  33740066 taaaattatattaattataaacattgatttatcattatctaaaaaaa 33740020  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 32874844 - 32874894
Alignment:
Q  21 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaa 72  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  32874844 aaaatttaaaa-tatattaatcataaacattcatttttcattatctacaaaa 32874894  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 39418173 - 39418216
Alignment:
Q  33 tatattaatgataaacattcatttatcattatctacaaaaacac 76  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||    
T  39418173 tatattaatcataaacattcatttatcattccctacaaaaacac 39418216  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 13858445 - 13858488
Alignment:
Q  34 atattaatgataaacattcatttatcattatctacaaaaacact 77  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  13858445 atattaatcataagcattcatttatcattatctacaaaaacact 13858488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 7181438 - 7181389
Alignment:
Q  26 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 75  Q
    |||||| ||||||||| |||| ||||| ||||||||| ||||||||||||    
T  7181438 ttaaaaatatattaatcataagcattcttttatcattctctacaaaaaca 7181389  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 55771104 - 55771061
Alignment:
Q  239 aatgcatgaacctctaacccctattttaatactccaaagatata 282  Q
    |||||||||||| | |||| ||||||||||||||||||||||||    
T  55771104 aatgcatgaaccccaaacctctattttaatactccaaagatata 55771061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 55835338 - 55835295
Alignment:
Q  239 aatgcatgaacctctaacccctattttaatactccaaagatata 282  Q
    |||||||||||| | |||| ||||||||||||||||||||||||    
T  55835338 aatgcatgaaccccaaacctctattttaatactccaaagatata 55835295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 56439344 - 56439290
Alignment:
Q  21 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 75  Q
    |||| |||||| |||||||||||| ||||||||| ||||||| ||||||| ||||    
T  56439344 aaaaattaaaaatatattaatgattaacattcatctatcattctctacaataaca 56439290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 34713068 - 34713117
Alignment:
Q  26 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 77  Q
    |||||| ||||||||| ||||||||||||||||||   ||||||||||||||    
T  34713068 ttaaaaatatattaatcataaacattcatttatca--ctctacaaaaacact 34713117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 5193176 - 5193229
Alignment:
Q  21 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 75  Q
    ||||||||||| ||||||||| |||||||||||||||| ||| | ||||||||||    
T  5193176 aaaatttaaaa-tatattaatcataaacattcatttattattctgtacaaaaaca 5193229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 38216488 - 38216438
Alignment:
Q  21 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaa 71  Q
    |||| |||||| ||||||||| |||||||||||| ||||||| ||||||||    
T  38216488 aaaaattaaaaatatattaatcataaacattcatctatcattctctacaaa 38216438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 6695406 - 6695458
Alignment:
Q  21 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaa 73  Q
    |||||| |||| ||||||||| |||| ||||||||||||||| |||| |||||    
T  6695406 aaaattaaaaattatattaattataagcattcatttatcattctctaaaaaaa 6695458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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