View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18702_low_11 (Length: 281)
Name: NF18702_low_11
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_low_11 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 5445891 - 5445611
Alignment:
| Q |
1 |
tcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445891 |
tcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggc |
5445792 |
T |
|
| Q |
101 |
cttaacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445791 |
cttaacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccac |
5445692 |
T |
|
| Q |
201 |
attttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaattttt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5445691 |
attttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaattttt |
5445611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5440783 - 5440996
Alignment:
| Q |
1 |
tcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaa--atga--gtatctcccaatg |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || |||| | ||||||| || | |||| || ||||| |
|
|
| T |
5440783 |
tcaaatccttcttgtactttctataaaataattcaacaagaaggttcaccaaattgttatcaaactcaacatcacccaaacattaacgtatgtctcaatg |
5440882 |
T |
|
| Q |
97 |
tggccttaacctggaacattccttcatcaatggt-cactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctc |
195 |
Q |
| |
|
| || ||||| | ||| |||||||| |||||| | |||||||||||||| || |||||||||||||| || ||||| | |||| ||||||||||||| |
|
|
| T |
5440883 |
ttgctttaactttgaatattccttcgtcaatgatggactaaggaaacatcaaaagttccaccaccaaggtcgaacacgggtgcatttttctcaccttctc |
5440982 |
T |
|
| Q |
196 |
tccacattttcttg |
209 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
5440983 |
tctacattttcttg |
5440996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 5433391 - 5433497
Alignment:
| Q |
1 |
tcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| ||||| ||| |
|
|
| T |
5433391 |
tcaaatctttcttgtactttctatgaaacaattcaacaagacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggc |
5433490 |
T |
|
| Q |
101 |
cttaacc |
107 |
Q |
| |
|
|||||| |
|
|
| T |
5433491 |
tttaacc |
5433497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 5432586 - 5432671
Alignment:
| Q |
158 |
accaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggct |
243 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||||||||||||||| | |||||| || ||||||| ||||| ||||||||| |
|
|
| T |
5432586 |
accaagatcgaacacaagtacattcgtctcaccttctctccacattttcctatccaaagtattagcaataacagctacagtaggct |
5432671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 5432486 - 5432565
Alignment:
| Q |
9 |
ttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatc |
88 |
Q |
| |
|
||||||||| |||| | || ||||||||||||| |||||||||||||||||| |||| | | |||||||||||||||| |
|
|
| T |
5432486 |
ttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaaattgaaagcacccaaatgagtatc |
5432565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 271
Target Start/End: Original strand, 54396588 - 54396721
Alignment:
| Q |
138 |
gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag |
237 |
Q |
| |
|
||||||||||| |||||||| || | ||||| | |||||| |||| || |||| |||| | |||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
54396588 |
gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag |
54396687 |
T |
|
| Q |
238 |
taggctcgttgatgatcctcatcacattaaaacc |
271 |
Q |
| |
|
||||||| || || ||||||| |||||| ||||| |
|
|
| T |
54396688 |
taggctcattaataatcctcaacacattcaaacc |
54396721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 39985876 - 39985950
Alignment:
| Q |
203 |
tttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaat |
277 |
Q |
| |
|
||||||||| | |||||||||||| ||||| ||||| ||||| ||||| || | ||| ||||||| ||||||||| |
|
|
| T |
39985876 |
tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaat |
39985950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University