View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_low_13 (Length: 253)
Name: NF18702_low_13
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 13511817 - 13511578
Alignment:
| Q |
14 |
caaagggaacatatgtctatttataggctaagtactactacattcatgtattacatcataatcatcatattaaatagcaattacatcaaatcattcaagt |
113 |
Q |
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| T |
13511817 |
caaagagaacatatgtctatttataggctaagtactactacattcatgtattacatcataagcatcatattaaatagcaattacatcaaatcattcaagt |
13511718 |
T |
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| Q |
114 |
gttcaaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcatgatca |
213 |
Q |
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| T |
13511717 |
gttcaaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcgtgatca |
13511618 |
T |
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| Q |
214 |
ttgggcttctcccatcattaggtgatggattcccacttct |
253 |
Q |
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| T |
13511617 |
tttggcttctcccatcattaggtgatggtttcccacttct |
13511578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 13601348 - 13601109
Alignment:
| Q |
14 |
caaagggaacatatgtctatttataggctaagtactactacattcatgtattacatcataatcatcatattaaatagcaattacatcaaatcattcaagt |
113 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13601348 |
caaagagaacatatgtctatttataggctaagtactactacattcatgtattacatcataagcatcatattaaatagcaattacatcaaatcattcaagt |
13601249 |
T |
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| Q |
114 |
gttcaaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcatgatca |
213 |
Q |
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| T |
13601248 |
gttcaaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcgtgatca |
13601149 |
T |
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| Q |
214 |
ttgggcttctcccatcattaggtgatggattcccacttct |
253 |
Q |
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| T |
13601148 |
tttggcttctcccatcattaggtgatggtttcccacttct |
13601109 |
T |
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