View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_low_16 (Length: 238)
Name: NF18702_low_16
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 11729516 - 11729701
Alignment:
| Q |
18 |
actctagacccagcagggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaat |
117 |
Q |
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| T |
11729516 |
actctagacccaactgggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatccttgcatactgaat |
11729615 |
T |
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| Q |
118 |
tccctaacatcgttacaattgatagaggaacaaaagtgttagaatctcagagaattttgtagtataaactttaattacttatgaag |
203 |
Q |
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| T |
11729616 |
tccctaacattgttacaattgatagaggaacaaaagtgttagaatctcagagaattttttagtataaactttaattacttaagaag |
11729701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 11720402 - 11720556
Alignment:
| Q |
18 |
actctagacccagcagggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaat |
117 |
Q |
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| T |
11720402 |
actcttgacccagcagggttagtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatccttgcataatgaat |
11720501 |
T |
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| Q |
118 |
tccctaacatcgttacaattgatagaggaacaaaagtgttagaatctcagagaat |
172 |
Q |
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| T |
11720502 |
tccctaacattgtcacaaatgatagaggaaaaaaagtgttagattctcaaagaat |
11720556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 11693577 - 11693381
Alignment:
| Q |
18 |
actctagacccagcagggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaat |
117 |
Q |
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| T |
11693577 |
actcttgacccaacagcattagtagtgttgcctgctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatccttgcatactgaat |
11693478 |
T |
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| Q |
118 |
tccctaacatcgttacaattgatagaggaacaaaagtgttagaatctcagagaattttgt-agtataaactttaattacttatgaagttctactaaccaa |
216 |
Q |
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| T |
11693477 |
tccctaacattcttacaaatgatagaggaa-aaaattgttagaatcttaatgaattttctaagtataaatt----ttacttatgaagttctagtaaccaa |
11693383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 11681183 - 11681358
Alignment:
| Q |
39 |
gtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaattccctaacatcgttacaattg |
138 |
Q |
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| T |
11681183 |
gtagtgttgcctgctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatccttgcatactgaattccctaacattgtcacaaatg |
11681282 |
T |
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| Q |
139 |
atagaggaacaaaagtgttagaatctcagagaattttgt-agtataaactttaattacttatgaagttctactaaccaact |
218 |
Q |
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| T |
11681283 |
atagaggaa-aaaattgttagaatcttaatgaattttctaagtataaatt----ttacttatgaagttccagtaaccaact |
11681358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 11672278 - 11672380
Alignment:
| Q |
24 |
gacccagcagggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaattcccta |
123 |
Q |
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| T |
11672278 |
gacccagcagcattagtagtgttgcctgctatgtgaaggccactaaagaagaagtcatttgcctcaacaagtttaggatccttgcataatgaattcccta |
11672377 |
T |
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| Q |
124 |
aca |
126 |
Q |
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||| |
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| T |
11672378 |
aca |
11672380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 11712600 - 11712526
Alignment:
| Q |
92 |
aagttttggatccttgcatactgaattccctaacatcgttacaattgatagaggaacaaaagtgttagaatctca |
166 |
Q |
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|||||| ||||||||||||| ||||||||| ||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
11712600 |
aagtttaggatccttgcataatgaattcccaaacattgtcacaaatgatagaggaacaaaagtgttagaatctca |
11712526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 7662369 - 7662475
Alignment:
| Q |
18 |
actctagacccagcagggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaaaaagttttggatccttgcatactgaat |
117 |
Q |
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||||||||||||| ||| ||||| |||||||| |||||||||||| ||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||| |
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| T |
7662369 |
actctagacccagtaggatttgtggtgttgcctgctatgtgaaggacactaaaaaagaagtcatttgcctcaacaagtttaggatccttgcatactgaat |
7662468 |
T |
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| Q |
118 |
tccctaa |
124 |
Q |
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| T |
7662469 |
tccctaa |
7662475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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