View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_low_4 (Length: 390)
Name: NF18702_low_4
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 16824660 - 16825036
Alignment:
| Q |
1 |
aagttggcttcttttttctgtttgttcactatataatattatcaattattttttactagtttgaagaactacaacaaggcttgggaattataagatctga |
100 |
Q |
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| T |
16824660 |
aagttagcttcttttttctgtttgttcactatataatattatcaattattttttactagtttgaagaactacaacaaggcttgggaattataagatctga |
16824759 |
T |
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| Q |
101 |
agatagataagaagacagaaaacaatgtttcagtcaaacctcttggaagctggtcagttccatccattagagatgatgcaaaacacttcagaaagcgatg |
200 |
Q |
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| T |
16824760 |
agatagataagaagacagaaaacaatgtttcagtcaaacctcttggaagctggtcagttccatccattagagatgatgcaaaacacttcagaaagcgatg |
16824859 |
T |
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| Q |
201 |
ttcctcgaattcgagacgatgagttcgaaagtggcaccaaatcttgcagtgaaaaccatgaaggtggtgctgcttctggtgaagaacaaggaccacgtcc |
300 |
Q |
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| T |
16824860 |
ttcctcgaattcgagaagatgaattcgaaagtggcaccaaatcttgcagtgaaaaccatgaaggtggtgctgcttctggtgaagaacaaggaccacgtcc |
16824959 |
T |
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| Q |
301 |
taaaagaaaacgttaccaccgccacactcagcaccagatccaagaaatggaatcgtaagaatactataccctatgct |
377 |
Q |
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| T |
16824960 |
taaaagaaaacgttaccaccgccacactcagcaccagatccaagaaatggaatcgtaagaatactataccctatgct |
16825036 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 37305027 - 37304940
Alignment:
| Q |
274 |
ttctggtgaagaacaaggaccacgtcctaaaagaaaacgttaccaccgccacactcagcaccagatccaagaaatggaatcgtaagaa |
361 |
Q |
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|||||||||||| |||| ||| ||| |||| | |||||||| ||||| || || ||||| |||||||||||||||||| |||||||| |
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| T |
37305027 |
ttctggtgaagatcaagaacctcgtgctaagaagaaacgttatcaccgtcatacacagcatcagatccaagaaatggaagcgtaagaa |
37304940 |
T |
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