View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_low_6 (Length: 373)
Name: NF18702_low_6
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 39945962 - 39946236
Alignment:
| Q |
13 |
taggccacgaacaaggtgataacataagttgatacaggagattgaaatcagtaacctacatgagaaatacttgcaccattataacacaaagacgaggaaa |
112 |
Q |
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| T |
39945962 |
taggccacgaacaaggtgataaaataagttgatacaggagattgaaatcagtaacctacatgagaaatacttgcaccattataacacaaagacgaggaaa |
39946061 |
T |
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| Q |
113 |
gtatactaaagcccttttagaaatcacattcagagtgatgatctaagttaaaagtagaaaaggttgcctacagtctacacaacactttcatgaaccaaaa |
212 |
Q |
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| T |
39946062 |
gtatactaaaacccttttagaaatcacattcagagtgatgatctaagttaaaagtagaaaaggttgcctacaggctacacaacactttcatgaaccaaaa |
39946161 |
T |
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| Q |
213 |
actacattggcatatgcccaactccaatcaatttaagcatgatgtgttgaggatatcctttctgaaactcctctg |
287 |
Q |
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| T |
39946162 |
actacattggcatatgcccaactccaatcaatttaagcatgatgtgttgaggatatcctttctgaaactcctctg |
39946236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 39946302 - 39946368
Alignment:
| Q |
286 |
tgttaacatggcatcaactaaaaccaataaaatgttaacaaatccaccagttgaggttgtgggaggt |
352 |
Q |
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| T |
39946302 |
tgttaacatggcatcaactaaaaccaataaaatgttaacaaatccaccagttgaggttgtgggaggt |
39946368 |
T |
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