View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_low_7 (Length: 364)
Name: NF18702_low_7
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 117 - 347
Target Start/End: Complemental strand, 5100566 - 5100336
Alignment:
| Q |
117 |
ttcgaatcccaaatggcattattacatctttaaattttgagagtttacacatccttttatcagaatgtctgtaaatgtgaaaaaagaatctggatttcac |
216 |
Q |
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| T |
5100566 |
ttcgaatcccaaatggcattattacatctttaaattttgagagtttacacatccttttatcagaatgtctgtaaatgtgaaaaaagaatctggatttcac |
5100467 |
T |
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| Q |
217 |
aaatgcaaattagaaaattgaagttggaggagagggttgtcacttgtcattagagaacactttaaatcagttctccacttcaatctttcttcacaagcaa |
316 |
Q |
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| T |
5100466 |
aaatgcaaattagaaaattgaagttggaggagagggttgtcacttgtcattagagaacactttaaatcagttctccacttcaatctttcttcacaagcaa |
5100367 |
T |
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| Q |
317 |
gaccttcagaatacacacaaacacactgatt |
347 |
Q |
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| T |
5100366 |
gaccttgagaatacacacaaacacactgatt |
5100336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 5100685 - 5100598
Alignment:
| Q |
34 |
gaagatacaattgaacagtctgtaagctttgtatgag-aggatcattgacacagaaaatccaaaagaaggataatgacatcatattcgaa |
122 |
Q |
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| T |
5100685 |
gaagatacaattgaacagtccgtaagctttgtatgagtaggatcattgacac--aaaatccaaaagaagggtaatgacatcatattcgaa |
5100598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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