View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18702_low_8 (Length: 363)
Name: NF18702_low_8
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 32569436 - 32569761
Alignment:
| Q |
20 |
ttagagaaagaagaacagattactacacaagctacagcaataaactccacctcaccaatgcaagtttacttgagtgacacactagctagtcttaattagt |
119 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
32569436 |
ttagagaaagaagagcggattactacacaagctacaacaataaactctacctcaccaa-----gtttacttgagtcacaagctatctagtcttaattagt |
32569530 |
T |
|
| Q |
120 |
ttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaatacacattgtactccctttttcatctatgagaaatgagacta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569531 |
ttgatctagtgtattagcatgtgattaggttctatgtactttacattttgtctataaatacacattgtactccctttttcatctatgagaaatgagacta |
32569630 |
T |
|
| Q |
220 |
ttttctatcttttactttccataacaacactttctagtttatttaaaactaaaaaca--tcattatttgtgcattttgtgcgacacaatttttataaact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32569631 |
ctttctatcttttactttccataacaacactttctagtttatttaaaactaaaaacatgtcactatttgtgcattttgtgcgacacaatttttgtaaacc |
32569730 |
T |
|
| Q |
318 |
gctgtatctcaaagaatttatatttgtagat |
348 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
32569731 |
attgtatctcaaagaatttatatttatagat |
32569761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 38629761 - 38629711
Alignment:
| Q |
195 |
ttttcatctatgagaaatgagactattttctatcttttactttccataaca |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
38629761 |
ttttcatctatgagaaatgagactattttctatctttagcttttcataaca |
38629711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 38629842 - 38629779
Alignment:
| Q |
85 |
ttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattagg |
148 |
Q |
| |
|
|||||||||| ||| ||||||| | |||||||| || || ||||||||||||||||||||||| |
|
|
| T |
38629842 |
ttacttgagtcacaagctagctactattaattagcttaatttagtgtattagcatgtgattagg |
38629779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 8754323 - 8754546
Alignment:
| Q |
17 |
ttattagagaaagaagaacagattactacacaagctacagcaataaactccacctcaccaatgcaagtttacttgagtgacacactagctagtcttaatt |
116 |
Q |
| |
|
|||||| |||||||| | ||||| |||||||||||||| |||||| ||| || ||||||| |||||||||||| ||| ||||||||| |||||| |
|
|
| T |
8754323 |
ttattaaagaaagaaaagaagattgctacacaagctacaacaataatctctacttcaccaa-----gtttacttgagtcacaagctagctagtattaatt |
8754417 |
T |
|
| Q |
117 |
agtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaatacacattgtactccctttttcatctatgagaaatgaga |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||||| | ||| ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
8754418 |
agtttaatctagtgtattagcatgtgattaggatttgtgtactttatacttttcctataaatacctattgtactatctttttcatctatgagaaatgaga |
8754517 |
T |
|
| Q |
217 |
ctattttctatcttttactttccataaca |
245 |
Q |
| |
|
||||||||||||||| |||||||||||| |
|
|
| T |
8754518 |
ctattttctatctttagctttccataaca |
8754546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 24065409 - 24065246
Alignment:
| Q |
82 |
agtttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaataca |
181 |
Q |
| |
|
||||||||||||| ||| ||||||||| || ||||||| ||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
24065409 |
agtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatact |
24065310 |
T |
|
| Q |
182 |
cattgtactccctttttcatctatgagaaatgagactattttctatcttttactttccataaca |
245 |
Q |
| |
|
| ||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
24065309 |
ctatgtactcacttttacatctatgagaaatgagactattttctattttttgctttccataaca |
24065246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 3137947 - 3137784
Alignment:
| Q |
82 |
agtttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaataca |
181 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||| || ||| ||| |||| ||||| |||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
3137947 |
agtttacttgagttacaagctagctagtcttacttagcttaatcaagttgattaacatgtcattaggcttaatgtactttacatattgcctataaatact |
3137848 |
T |
|
| Q |
182 |
cattgtactccctttttcatctatgagaaatgagactattttctatcttttactttccataaca |
245 |
Q |
| |
|
| ||||||| |||| ||||||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
3137847 |
gaatgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccataaca |
3137784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 24674333 - 24674488
Alignment:
| Q |
88 |
cttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaatacacattgt |
187 |
Q |
| |
|
||||||| ||| ||||||||| || ||||||| || |||| |||||||||||| |||||| |||||||||||||| |||| ||||||||| | ||| |
|
|
| T |
24674333 |
cttgagttacaagctagctagttatacttagtttaatatagtagattagcatgtgactaggtttaatgtactttacatattgcatataaataccctatgt |
24674432 |
T |
|
| Q |
188 |
actccctttttcatctatgagaaatgagactattttctatcttttactttccataa |
243 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||||||| | ||| |||||||||| |
|
|
| T |
24674433 |
actcactttcacatctatgagaaatgagcctattttctcttctttgctttccataa |
24674488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 7684772 - 7684917
Alignment:
| Q |
101 |
ctagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaatacacattgtactccctttttca |
200 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||||| |||||| |||| ||| | | ||| | ||||||||| || |||||| | ||| | |
|
|
| T |
7684772 |
ctagctagtattaattagcttaatctagtgtattagcatgttattaggaattatgtgcttcatacttttcttataaatacccaatgtactatcaatttta |
7684871 |
T |
|
| Q |
201 |
tctatgagaaatgagactattttctatcttttactttccataacaa |
246 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
7684872 |
tctatgagaaatgagatacttttcattctttcactttccataacaa |
7684917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 25242094 - 25241929
Alignment:
| Q |
85 |
ttacttgagtgacacactagctagtcttaattagtttgatctagtgtattagcatgtgattaggttcaatgtactttacattttgcctataaatac---- |
180 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||||||| ||||||| |||| |||||||||||| | |||||||||||||| ||| ||| |||||| |
|
|
| T |
25242094 |
ttacttgagttacaagctagctagttataattagtttaatctagtagattaacatgtgattaggcttaatgtactttacatattgactaaaaataccgta |
25241995 |
T |
|
| Q |
181 |
acattgtactccctttttcatctatgagaaatgagactattttctatcttttactttccataacaa |
246 |
Q |
| |
|
|| |||||| |||| ||||||||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
25241994 |
tcaatgtacttactttcacatctatgagaaatgagactattttctattattttctttccgtaacaa |
25241929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 37673602 - 37673541
Alignment:
| Q |
184 |
ttgtactccctttttcatctatgagaaatgagactattttctatcttttactttccataaca |
245 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| | || |||||| ||||| |
|
|
| T |
37673602 |
ttgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccgtaaca |
37673541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University