View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18702_low_9 (Length: 341)
Name: NF18702_low_9
Description: NF18702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18702_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 41536475 - 41536777
Alignment:
| Q |
16 |
atagtgaatcaatgaagcaaacaatatataccataataccattcataaattataaaaattaggtgaccaaaatcttatcctcatcccaaagtacaatatc |
115 |
Q |
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| T |
41536475 |
atagtgaatcaatgaagcaaacaatatatac--------cattcataaattataaaaattaggtgaccaaaatcttatcctcatcccaaagtacaatatc |
41536566 |
T |
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| Q |
116 |
atgaatgaaaataatgatggactaccatatcagagtttccttccattttccttaaaaggaatagaaaatctcctcacataccaaatagattttcctttga |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41536567 |
atgaatgaaaataatgatggactactatatcagagtttccttccattttccttaaaaggaatagaaaatctcctcacataccaaatagattttcttttga |
41536666 |
T |
|
| Q |
216 |
ctcaaaattccatcaaccttttatttttcaaccagtaacttttccattatactcgaacacatagaataattaaaaggacaaaacttatgtacatttttac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |
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| T |
41536667 |
ctcaaaattccatcaaccttttatttttcaaccagtaacttttccattatactcgaacacatagaataattaaaatcacaaaaattatatacatttttac |
41536766 |
T |
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| Q |
316 |
atgttcagttt |
326 |
Q |
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||||||||||| |
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| T |
41536767 |
atgttcagttt |
41536777 |
T |
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