View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18703_high_3 (Length: 314)

Name: NF18703_high_3
Description: NF18703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18703_high_3
NF18703_high_3
[»] scaffold0210 (3 HSPs)
scaffold0210 (13-298)||(11240-11525)
scaffold0210 (243-297)||(3267-3321)
scaffold0210 (173-219)||(3327-3373)
[»] chr3 (4 HSPs)
chr3 (153-298)||(12713480-12713625)
chr3 (13-106)||(12713390-12713483)
chr3 (243-297)||(12721347-12721401)
chr3 (173-219)||(12721295-12721341)
[»] chr5 (1 HSPs)
chr5 (145-272)||(7878721-7878848)
[»] scaffold0479 (2 HSPs)
scaffold0479 (173-219)||(12756-12802)
scaffold0479 (246-297)||(12696-12747)
[»] chr8 (2 HSPs)
chr8 (194-268)||(32829392-32829466)
chr8 (228-269)||(33019248-33019289)


Alignment Details
Target: scaffold0210 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 11525 - 11240
Alignment:
Q  13 aatatagttatatgctggaatgaaatctcctacatagttaaattggagacaagctatttggttgatttccagctccgtgtggaggtaccgtcaatgtcat 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  11525 aatatagctatatgctggaatgaaatctcctacatagttaaattggagacaaactatttggttgatttccagcttcgtgtggaggtactgtcaatgtcat 11426  T
Q  113 atatagcgaaattgtttcccgaaatgttagatctgagttttcaaacatacggattgctgaaacgagaaaaatcatctacaaccaaagatatgatgaagtc 212  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  11425 atatagtgaaattgtttcccgaaatgttacatctgagttttcaaacatatggattgctggaacgagaaatatcatctacaaccaaagatatgatgaagtc 11326  T
Q  213 tgtgccggttgccctccttatctttttggaagctaataacaacttatcagtctcattttccgatggcacctgtccatagtacaata 298  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11325 tgtgccggttgccctccttatctttttgaaagctaataacaacttatcagtctcattttccgatggcacctgtccatagtacaata 11240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 3321 - 3267
Alignment:
Q  243 agctaataacaacttatcagtctcattttccgatggcacctgtccatagtacaat 297  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||||||||    
T  3321 agctaataacagcttatcagtctcattttccgatggcaccagtacatagtacaat 3267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 3373 - 3327
Alignment:
Q  173 aacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccg 219  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||||    
T  3373 aacgagaagaatcatctgcaaccattgatatgatgaagtctgtgccg 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 153 - 298
Target Start/End: Original strand, 12713480 - 12713625
Alignment:
Q  153 tcaaacatacggattgctgaaacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccggttgccctccttatctttttggaagctaataac 252  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12713480 tcaaacatacagattgctggaacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccggttgccctccttatctttttgaaagctaataac 12713579  T
Q  253 aacttatcagtctcattttccgatggcacctgtccatagtacaata 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12713580 aacttatcagtctcattttccgatggcacctgtccatagtacaata 12713625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 12713390 - 12713483
Alignment:
Q  13 aatatagttatatgctggaatgaaatctcctacatagttaaattggagacaagctatttggttgatttccagctccgtgtggaggtaccgtcaa 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  12713390 aatatagttatatgctggaatgaaaactcctacatagttaaattggagacaagctatttggttgatttccagctccgtgtggtggtactgtcaa 12713483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 12721347 - 12721401
Alignment:
Q  243 agctaataacaacttatcagtctcattttccgatggcacctgtccatagtacaat 297  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||||||||    
T  12721347 agctaataacagcttatcagtctcattttccgatggcaccagtacatagtacaat 12721401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 12721295 - 12721341
Alignment:
Q  173 aacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccg 219  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||||    
T  12721295 aacgagaagaatcatctgcaaccattgatatgatgaagtctgtgccg 12721341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 145 - 272
Target Start/End: Original strand, 7878721 - 7878848
Alignment:
Q  145 ctgagttttcaaacatacggattgctgaaacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccggttgccctccttatctttttggaag 244  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  7878721 ctgagttttccaacatacgcattgctggaacgagaaaaatcatcagcaaccaaagatatgatgaagtcagtgccggttgccctccttatctttttggcag 7878820  T
Q  245 ctaataacaacttatcagtctcattttc 272  Q
    ||||||||| ||||||||||||||||||    
T  7878821 ctaataacagcttatcagtctcattttc 7878848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 12802 - 12756
Alignment:
Q  173 aacgagaaaaatcatctacaaccaaagatatgatgaagtctgtgccg 219  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||    
T  12802 aacgagaagaatcatctgcaaccaaagatatgatgaagtctgtgccg 12756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 12747 - 12696
Alignment:
Q  246 taataacaacttatcagtctcattttccgatggcacctgtccatagtacaat 297  Q
    |||||||| |||||||||||||||||||| ||||||| || |||||||||||    
T  12747 taataacagcttatcagtctcattttccggtggcaccagtacatagtacaat 12696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 32829466 - 32829392
Alignment:
Q  194 ccaaagatatgatgaagtctgtgccggttgccctccttatctttttggaagctaataacaacttatcagtctcat 268  Q
    |||| ||||||| |||||| ||||| || ||||| ||||||||| |||  |||||||||||||||| | ||||||    
T  32829466 ccaaggatatgacgaagtcggtgcctgtggcccttcttatctttctggcggctaataacaacttattactctcat 32829392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 33019248 - 33019289
Alignment:
Q  228 ccttatctttttggaagctaataacaacttatcagtctcatt 269  Q
    |||||||||||||| ||||||||||||||||| | |||||||    
T  33019248 ccttatctttttggcagctaataacaacttattactctcatt 33019289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University