View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18703_low_1 (Length: 474)
Name: NF18703_low_1
Description: NF18703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18703_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 22 - 468
Target Start/End: Complemental strand, 34408958 - 34408512
Alignment:
| Q |
22 |
ggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggccttctgccttgctgcaatatca |
121 |
Q |
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| T |
34408958 |
ggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggccttctgccttgctgcaacatca |
34408859 |
T |
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| Q |
122 |
tctgacgacgacatgtttccaatcaatatatctttgcaatgcaacaatgtgatgtaaccaattacaacttattcaaaggtctagtagctagcttgtgttc |
221 |
Q |
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| T |
34408858 |
tctgacgatgacatgtttccgatcaatatatctttgcaatgcaacaatgtgatgtaaccaattacaacttattcaaaggtctagtagctagcttgtgttc |
34408759 |
T |
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| Q |
222 |
tggtgtgtcttttcttttgtaattacaatttatccataagtactgtcataagttaccacaaagtgtggagattatatggaggttgagcattactataaat |
321 |
Q |
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| T |
34408758 |
tggtgtgtcttttcttttgtaattacaatttatccataagtactgtcataagttaccacaaagtgtggagattatatggaggttgagcattactataaat |
34408659 |
T |
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| Q |
322 |
agaactttattaatccacaagtgataacacgatctactttttcgctaaacatcactcggtcaactacatttagttagttattacagttagtaacaattat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408658 |
agaactttattaatccacaagtgataacacgatctactttttcgctaaacatcactcggtcaactacatttagttagttattacagttagtaacaattat |
34408559 |
T |
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| Q |
422 |
acgggagaaacgtatgcttcggacttgattataattatattcttcga |
468 |
Q |
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| T |
34408558 |
acgggagaaacttatgcttcggacttagttataattatattattcga |
34408512 |
T |
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