View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18703_low_2 (Length: 470)
Name: NF18703_low_2
Description: NF18703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18703_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Complemental strand, 53847792 - 53847355
Alignment:
| Q |
16 |
atgtacctgtaatttgtaaatgtgatgtatgtaacgattcactcaattaaaatcaaatccagtgaaaactgaattggagcatgcgtgtgtattaatatac |
115 |
Q |
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| T |
53847792 |
atgtacctgtaatttgtaaatgtgatgtatgtaacgattcactcaattaagatcaaatccagtgaaaactgaattggagcatgcgtgtgtattaatatac |
53847693 |
T |
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| Q |
116 |
ctcattttcttctttaaggctaagagttccggcgaggaaacttgtgtgatctatatctgcttttacatctgatatgcatctagcctagacaagacaatca |
215 |
Q |
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| T |
53847692 |
ctcattttcttctttaaggctaagagttccggcgaggaaacttgtgtgatctgtatctgctttcacatctgatatgcatctagcctagacaagacaatca |
53847593 |
T |
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| Q |
216 |
aaacagtgattaaagggaatgatgataattggattaattaatggagagtggggggtgaataatgagaattgtgaaattgacctgatatttgagaccatat |
315 |
Q |
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| T |
53847592 |
aaacagtgattaaagggaatgataataattggattaattaatggagagtggggggtgaataatgagaattgtgaaattgacctgatatttgagaccatat |
53847493 |
T |
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| Q |
316 |
ccgataccagatgatacagcttgcattgcttttgatcttggttgctgcttagattatacctgaatgaatggaaagtttcagctacactgtccggagttaa |
415 |
Q |
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| T |
53847492 |
ccgataccagatgatacagcttgcattgcttttgatcttggttgctgcttagactatacctgaatgaatggaaagtttcagctacactgtccggagttaa |
53847393 |
T |
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| Q |
416 |
acccaaaaatgccaccgtagtgcat-ggttgctgcttg |
452 |
Q |
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| T |
53847392 |
acccaaaaatgccaccgtagtgcatgggttgctgcttg |
53847355 |
T |
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