View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18703_low_3 (Length: 336)
Name: NF18703_low_3
Description: NF18703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18703_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 39396713 - 39396403
Alignment:
| Q |
10 |
tgagatgaactatctaacattttggaatgcccaaataaaattatcttgttgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagat |
109 |
Q |
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| T |
39396713 |
tgaggtgaactatctaacattttggaatgcccaaataaaattatcttgttgttcatgttccaaataagcaaaagctgccgaaaaagataactttgtagat |
39396614 |
T |
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| Q |
110 |
gttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataactttactgaatcaag |
209 |
Q |
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| T |
39396613 |
gttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataacttcactgaatcaag |
39396514 |
T |
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| Q |
210 |
atttgtccaaaatacggcactcgcagcatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatt |
309 |
Q |
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| T |
39396513 |
atgtgtccaaaatacggcacttgcaacatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatt |
39396414 |
T |
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| Q |
310 |
gttgtgtaaga |
320 |
Q |
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| T |
39396413 |
tttgtgtaaga |
39396403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 43598202 - 43598128
Alignment:
| Q |
62 |
tcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggt |
136 |
Q |
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| T |
43598202 |
tcatgttccaaataagcaaaagctaccaaaaacgttaacttcatagatgttacgctaacaatttaaagcaatggt |
43598128 |
T |
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